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Identifying markers of insulin resistance in the plasma proteome

2013· article· en· W2307541972 on OpenAlexaffabout
Joseph Jamnik, Bibiana García‐Bailo, Christoph H. Borchers, Ahmed El‐Sohemy

Bibliographic record

VenueThe FASEB Journal · 2013
Typearticle
Languageen
FieldMedicine
TopicAdipokines, Inflammation, and Metabolic Diseases
Canadian institutionsGenome British ColumbiaUniversity of VictoriaUniversity of Toronto
Fundersnot available
KeywordsInsulin resistanceAdiponectinVitronectinInternal medicinePopulationEndocrinologyMedicineSerum amyloid ABlood proteinsHaptoglobinType 2 diabetesHemopexinBiologyDiabetes mellitusInsulinInflammationReceptorBiochemistry

Abstract

fetched live from OpenAlex

Type 2 diabetes (T2D) represents a significant global health problem. The plasma proteome comprises numerous high‐abundance proteins that may be associated with the development of T2D. The objective was to determine the association between HOMA‐IR, a common measure of insulin resistance, and 54 plasma proteins belonging to disease‐associated pathways in a population of healthy young adults (n=488) from the Toronto Nutrigenomics and Health Study. Protein concentrations were measured by a multiple reaction monitoring HPLC‐MS/MS assay. General linear models were used to assess the association between plasma proteins and HOMA‐IR. Analyses were adjusted for age, sex, ethnicity, waist circumference, physical activity, and contraceptive use among women. Hemopexin, complement factor H, heparin cofactor II, afamin, α 1 ‐anti‐trypsin, α 2 ‐HS‐glycoprotein, apolipoprotein L1, complement C3, serum amyloid P‐component, vitronectin, and transthyretin were significantly ( p <0.0009) positively correlated with HOMA‐IR. Adiponectin, an anti‐inflammatory protein, was inversely correlated with HOMA‐IR. These results suggest that a number of plasma proteins may be useful biomarkers of insulin resistance and T2D risk. Research support from the Advanced Foods and Materials Network.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.262
Teacher spread0.242 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2013
Admission routes2
Has abstractyes

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