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Record W2316951421 · doi:10.2298/gensr1501219d

Efficiency of the different marker systems for estimation of distinctness between sister line wheat cultivars

2015· article· en· W2316951421 on OpenAlexaff
Srbislav Denčić, R. M. DePauw, Vojislava Momčilović, Ankica Kondić‐Špika

Bibliographic record

VenueGenetika · 2015
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicWheat and Barley Genetics and Pathology
Canadian institutionsGenome Prairie
FundersMinistarstvo Prosvete, Nauke i Tehnološkog Razvoja
KeywordsCultivarMicrosatelliteAlleleBiologySisterGliadinMolecular markerGenetic markerGeneticsBotanyFood scienceGeneGluten

Abstract

fetched live from OpenAlex

A set of 42 winter wheat cultivars developed from nine populations were evaluated for distinctness. Three marker systems: morphological markers, gliadin allele profiles and microsatellites were used to analyze distinctness between sister cultivars. The morphological based distinctness tests for wheat are based on a crop-specific set of characters that comply with UPOV guidelines. The morphological markers were quite informative although they were not capable to estimate the distances/distinctness between two pair of sister cultivars Evropa 90 and Evropa and Novosadska rana 3 and Novosadska rana 2. The gliadins allele profiles were the least efficient to estimate distinctness between sister line cultivars. This system was not capable to distinguish even cultivars developed from different populations. Sister line wheat cultivars were fingerprinted with 19 wheat microsatellites markers. A total of 106 alleles were detected at 19 wheat microsatellite loci, resulting in an average allele number per marker of 5.6. The number of markers was sufficient to distinguish among most sister line cultivars. Only one pair of sister cultivars, Loznicanka and Kosovka, derived from the same cross could not be distinguished. Comparing all marker systems to evaluate distinctness of sister line wheat cultivars the most efficient was microsatellite markers while gliadin allele profiles was the least efficient. Correlations between matrices based on pedigree data and morphological marker, gliadin profiles and microsatellites were significant but not large.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.002
Threshold uncertainty score0.011

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.003
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0020.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.047
GPT teacher head0.253
Teacher spread0.206 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2015
Admission routes1
Has abstractyes

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