Competition of motile and immotile bacterial strains in a petri dish
Bibliographic record
Abstract
Bacterial competition is an important component in many practical applications such as plant roots colonization and medicine (especially in dental plaque). Bacterial motility has two types of mechanisms -- directed movement (chemotaxis) and undirected movement. We study undirected bacterial movement mathematically and numerically which is rarely considered in literature. To study bacterial competition in a petri dish, we modify and extend the model used in Wei et al. (2011) to obtain a group of more general and realistic PDE models. We explicitly consider the nutrients and incorporate two bacterial strains characterized by motility. We use different nutrient media such as agar and liquid in the theoretical framework to discuss the results of competition. The consistency of our numerical simulations and experimental data suggest the importance of modeling undirected motility in bacteria. In agar the motile strain has a higher total density than the immotile strain, while in liquid both strains have similar total densities. Furthermore, we nd that in agar as bacterial motility increases, the extinction time of the motile bacteria decreases without competition but increases in competition. In addition, we show the existence of traveling-wave solutions mathematically and numerically.
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How this classification was reachedexpand
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.001 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one teacher head, not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".