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Record W2330029841 · doi:10.3934/mbe.2005.2.675

Spatial Buffering Mechanism: Mathematical Model and Computer Simulations

2005· article· en· W2330029841 on OpenAlex
Benjamin Steinberg, Yuqing Wang, Huaxiong Huang, Robert M. Miura

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueMathematical Biosciences & Engineering · 2005
Typearticle
Languageen
FieldNeuroscience
TopicNeural dynamics and brain function
Canadian institutionsPacific Institute for the Mathematical SciencesYork UniversityUniversity of Toronto
Fundersnot available
KeywordsCellular automatonMechanism (biology)Biological systemComputer scienceExtracellularLattice (music)Pattern formationComputer simulationBrain CellStatistical physicsNeuroscienceSimulationBiophysicsPhysicsChemistryAlgorithmBiology

Abstract

fetched live from OpenAlex

It is generally accepted that the spatial buffering mechanism is important to buffer extracellular-space potassium in the brain-cell microenviron- ment. In the past, this phenomenon, generally associated with glial cells, has been treated analytically and numerically using a simplified one-dimensional description. The present study extends the previous research by using a novel numerical scheme for the analysis of potassium buffering mechanisms in the extracellular brain-cell microenvironment. In particular, a lattice-cellular automaton was employed to simulate a detailed two-compartment model of a two-dimensional brain-cell system. With this numerical approach, the present study elaborates upon previous theoretical work on spatial buffering (SB) by incorporating a more realistic structure of the brain-cell microenvironment, which was not feasible earlier. We use the experimental paradigm consisting of iontophoretic injection of KCl to study the SB mechanism. Our simulations confirmed the results reported in the literature obtained by an averaged model. The results also show that the additional effects captured by a simplified two- dimensional geometry do not alter significantly the conclusions obtained from the averaged model. The details of applying such a numerical method to the study of ion movements in cellular environments, as well as its potential for future study, are discussed.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.835
Threshold uncertainty score0.591

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.233
Teacher spread0.211 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it