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Record W2330029841 · doi:10.3934/mbe.2005.2.675

Spatial Buffering Mechanism: Mathematical Model and Computer Simulations

2005· article· en· W2330029841 on OpenAlexaff
Benjamin Steinberg, Yuqing Wang, Huaxiong Huang, Robert M. Miura

Bibliographic record

VenueMathematical Biosciences & Engineering · 2005
Typearticle
Languageen
FieldNeuroscience
TopicNeural dynamics and brain function
Canadian institutionsPacific Institute for the Mathematical SciencesYork UniversityUniversity of Toronto
Fundersnot available
KeywordsCellular automatonMechanism (biology)Biological systemComputer scienceExtracellularLattice (music)Pattern formationComputer simulationBrain CellStatistical physicsNeuroscienceSimulationBiophysicsPhysicsChemistryAlgorithmBiology

Abstract

fetched live from OpenAlex

It is generally accepted that the spatial buffering mechanism is important to buffer extracellular-space potassium in the brain-cell microenviron- ment. In the past, this phenomenon, generally associated with glial cells, has been treated analytically and numerically using a simplified one-dimensional description. The present study extends the previous research by using a novel numerical scheme for the analysis of potassium buffering mechanisms in the extracellular brain-cell microenvironment. In particular, a lattice-cellular automaton was employed to simulate a detailed two-compartment model of a two-dimensional brain-cell system. With this numerical approach, the present study elaborates upon previous theoretical work on spatial buffering (SB) by incorporating a more realistic structure of the brain-cell microenvironment, which was not feasible earlier. We use the experimental paradigm consisting of iontophoretic injection of KCl to study the SB mechanism. Our simulations confirmed the results reported in the literature obtained by an averaged model. The results also show that the additional effects captured by a simplified two- dimensional geometry do not alter significantly the conclusions obtained from the averaged model. The details of applying such a numerical method to the study of ion movements in cellular environments, as well as its potential for future study, are discussed.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.015
Threshold uncertainty score0.030

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0020.001
Research integrity0.0020.001
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.233
Teacher spread0.211 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations19
Published2005
Admission routes1
Has abstractyes

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