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Record W2332425754 · doi:10.1038/protex.2016.018

Cell Labeling via Photobleaching

2016· article· en· W2332425754 on OpenAlexafffund
Santiago Costantino, Loïc Binan, Javier Mazzaferri, Claudia L. Kleinman

Bibliographic record

VenueProtocol Exchange · 2016
Typearticle
Languageen
FieldEngineering
Topic3D Printing in Biomedical Research
Canadian institutionsHôpital Maisonneuve-Rosemont
FundersNatural Sciences and Engineering Research Council of CanadaCanadian Institutes of Health Research
KeywordsPhotobleachingChemistryBiophysicsCell biologyBiologyPhysicsFluorescenceOptics

Abstract

fetched live from OpenAlex

This protocol describes the technique Cell Labeling via Photobleaching \(CLaP) for adding uorescent tags to individual cells in a microscopy eld based on their shape, position, behavior, or any other visual feature.The procedure tethers biotin molecules to the cell membrane using a focused laser beam.Biotinylated cells are subsequently tagged by adding uorescent streptavidin conjugates to the culture medium.The method can be used for tracking cells, and it can be combined with ow cytometry or micro uidics-based single-cell capture for genomic or other biochemical analysis.The whole procedure typically takes one hour, plus one extra minute for each tagged cell.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.019
Threshold uncertainty score0.065

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0190.022

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.281
Teacher spread0.263 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2016
Admission routes2
Has abstractyes

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