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Record W2332703416 · doi:10.1021/jp404287t

Atomic Property Weighted Radial Distribution Functions Descriptors of Metal–Organic Frameworks for the Prediction of Gas Uptake Capacity

2013· article· en· W2332703416 on OpenAlexafffund
Michael Fernández, Nicholas R. Trefiak, Tom K. Woo

Bibliographic record

VenueThe Journal of Physical Chemistry C · 2013
Typearticle
Languageen
FieldChemistry
TopicMetal-Organic Frameworks: Synthesis and Applications
Canadian institutionsUniversity of Ottawa
FundersNatural Sciences and Engineering Research Council of CanadaCanada Research ChairsUniversity of Ottawa
KeywordsSBusQuantitative structure–activity relationshipMetal-organic frameworkVirtual screeningPorosityAdsorptionMolecular descriptorChemistryBiological systemComputer scienceComputational chemistryMachine learningPhysical chemistryOrganic chemistryMolecular dynamics

Abstract

fetched live from OpenAlex

Metal–organic frameworks (MOFs) are porous materials with exceptional host–guest properties with huge potential for gas separation. The combinatorial design of MOFs demands the in silico screening of the nearly infinite combinations of structural building blocks using efficient computational tools. We report here a novel atomic property weighted radial distribution function (AP-RDF) descriptor tailored for large-scale Quantitative Structure–Property Relationship (QSPR) predictions of gas adsorption of MOFs. A total of ∼58,000 hypothetical MOF structures were used to calibrate correlation models of the methane, N 2, and CO 2 uptake capacities from grand-canonical Monte Carlo (GCMC) simulations. The principal component analysis (PCA) transform of the AP-RDF descriptors exhibited good discrimination of MOF inorganic SBUs, geometrical properties, and more surprisingly gas uptake capacities. While the simulated uptake capacities correlated poorly to the void fraction, surface area, and pore size, the newly introduced AP-RDF scores yielded outstanding QSPR predictions for an external test set of ∼25,000 MOFs with R 2 values in the range from 0.70 to 0.82. The accuracy of the predictions decreased at low pressures, mainly for MOFs with V 2 O 2 or Zr 6 O 8 inorganic structural building units (SBUs) and organic SBUs with fluorine substituents. The QSPR models can serve as efficient filtering tools to detecting promising high-performing candidates at the early stage of virtual high-throughput screening of novel porous materials. The predictive models of the gas uptake capacities of MOFs are available online via our MOF informatics analysis (MOFIA) tool.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.018
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.213
Teacher spread0.196 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations170
Published2013
Admission routes2
Has abstractyes

Explore more

Same venueThe Journal of Physical Chemistry CSame topicMetal-Organic Frameworks: Synthesis and ApplicationsFrench-language works237,207