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Record W2333246966 · doi:10.1242/jeb.092064

NO OXYGEN? SHUT DOWN YOUR F1FO-ATPASE

2013· article· en· W2333246966 on OpenAlexaboutno aff
Nicola Stead

Bibliographic record

VenueJournal of Experimental Biology · 2013
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMitochondrial Function and Pathology
Canadian institutionsnot available
Fundersnot available
KeywordsAnoxic watersMitochondrionOxygenRespirationATPaseAnaerobic exerciseATP synthaseChemiosmosisTurtle (robot)ChemistryBiologyZoologyBiophysicsEcologyBiochemistryEnzymeAnatomyPhysiology

Abstract

fetched live from OpenAlex

Mitochondria are our bodies' powerhouses, and to efficiently produce energy, via aerobic respiration, they use the enzymatic activities of four different protein complexes (I to IV) to pump hydrogen ions across the inner mitochondrial membrane. The H+ ions will then flow back into the mitochondria, down their concentration gradient, via a fifth complex, which drives ATP production, where the H+ ions are then accepted by oxygen to make water. ‘Without oxygen, animals have to move to anaerobic respiration, which yields a much lower level of ATP. So their balance between ATP supply and demand is greatly affected’, explains Gina Galli, from the University of Manchester, UK. The absence of oxygen (anoxia) can be disastrous, as can be seen in pathologies such as stroke or heart attacks, but for some animals, such as the red-eared slider turtle, anoxic periods are just a normal part of life. So, as part of her postdoc in Jeffrey Richards' lab at the University of British Columbia, Canada, Galli decided to find out what we can learn from anoxia tolerant turtles (p. 3283).Galli already knew some of the tricks turtles employ during periods of anoxia: ‘They have the ability to shut down all the cellular processes in their bodies that consume a large amount of ATP, but we wanted to see if that was also the case at the level of the mitochondria.’ To investigate this possibility, she divided 26 turtles into two groups. One group was kept in normal, normoxic water conditions while the other group was submerged in water devoid of oxygen for 2 weeks. Galli then isolated cardiac fibres from the turtle's hearts and placed individual fibres into tiny respirometer chambers, equipped with oxygen-sensing electrodes. Galli could then measure the fibres' aerobic respiration capacity by how much oxygen was depleted. To measure the capacity of the individual complexes I–IV, Galli used specific drugs to inhibit each complex. Overall, she found that the aerobic capacity at complexes I–IV was reduced in the cardiac fibres from anoxic turtles.Next, Galli wondered whether this reduction in aerobic capacity was caused by a reduction in the enzymatic activity of each complex. To test this, Galli supplied tissue samples with substrates that were unique to each complex, one by one, and measured how much product was produced. To her surprise, Galli found that each of the complexes from anoxic turtles was working at the same rate as complexes from normoxic turtles. Perplexed, Galli wondered whether the apparent reduction in aerobic capacity was perhaps just due to a decrease in the total number of mitochondria in cardiac cells from anoxic turtles. However, anoxic and normoxic cardiac fibres were able to produce the same amount of citrate (via the unique mitochondrial enzyme citrate synthase), suggesting that total mitochondrial levels were the same in the two conditions.So, Galli decided to test the enzymatic activity of the fifth and final complex, also known as the F1FO-ATPase, and found its enzymatic activity was indeed shut down. Suddenly, everything fell into place – shutting down this complex would reduce flow through complexes I–IV but not their enzymatic activities. In addition, shutting down this complex has clear benefits, as Galli explains: ‘When there's no oxygen, the F1FO-ATP synthase will start consuming ATP to keep that H+ gradient going. It starts to chew up all of the available ATP; it will eventually lead to ATP depletion and that's one of the biggest contributors to cellular breakdown.’ Recent studies have shown that, in mammals, drugs inhibiting this final complex do protect tissues against anoxia, but it seems that turtles have known the secret all along!

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.011
Threshold uncertainty score0.038

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.003
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0000.000
Science and technology studies0.0010.001
Scholarly communication0.0010.002
Open science0.0000.001
Research integrity0.0030.004
Insufficient payload (model declined to judge)0.0110.005

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.283
Teacher spread0.268 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2013
Admission routes1
Has abstractyes

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