MétaCan
Menu
Back to cohort
Record W2333987421 · doi:10.4018/ijcmam.2014070101

Subspace Clustering of DNA Microarray Data

2014· article· en· W2333987421 on OpenAlexaff
Alain Tchagang, Fazel Famili, Youlian Pan

Bibliographic record

VenueInternational Journal of Computational Models and Algorithms in Medicine · 2014
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGene expression and cancer classification
Canadian institutionsNational Research Council Canada
Fundersnot available
KeywordsBiclusteringCluster analysisComputer scienceSubspace topologyIdentification (biology)Data miningMicroarray analysis techniquesBiological dataGene chip analysisComputational biologyDNA microarrayArtificial intelligenceBioinformaticsCorrelation clusteringGeneBiologyCURE data clustering algorithmGenetics

Abstract

fetched live from OpenAlex

Identification of biological significant subspace clusters (biclusters and triclusters) of genes from microarray experimental data is a very daunting task that emerged, especially with the development of high throughput technologies. Several methods and applications of subspace clustering (biclustering and triclustering) in DNA microarray data analysis have been developed in recent years. Various computational and evaluation methods based on diverse principles were introduced to identify new similarities among genes. This review discusses and compares these methods, highlights their mathematical principles, and provides insight into the applications to solve biological problems.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.842
Threshold uncertainty score0.219

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.040
GPT teacher head0.334
Teacher spread0.294 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2014
Admission routes1
Has abstractyes

Explore more

Same venueInternational Journal of Computational Models and Algorithms in MedicineSame topicGene expression and cancer classificationFrench-language works237,207