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Record W2335073611 · doi:10.1515/zpch-2014-0541

The Interaction of Bio-Molecules with Lipid Membranes Studied by X-ray Diffraction

2014· article· en· W2335073611 on OpenAlexaff
Maikel C. Rheinstädter, Laura Toppozini, Hannah Dies

Bibliographic record

VenueZeitschrift für Physikalische Chemie · 2014
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicProtein Structure and Dynamics
Canadian institutionsMcMaster University
Fundersnot available
KeywordsMembraneDiffractionMoleculeX-ray crystallographyFiber diffractionChemistryLipid bilayerCrystallographyBiological membraneChemical physicsMaterials scienceNanotechnologyBiophysicsPhysicsBiochemistryOpticsOrganic chemistryBiology

Abstract

fetched live from OpenAlex

Abstract For the past 100 years, X-ray diffraction has been a powerful and indispensable tool to study the structure of matter. The challenge when studying molecular ordering in biological materials is their inherent disorder and strong fluctuations, which often suppress the formation of Bragg peaks. In the case of membranes, X-rays can detect molecules inside and confined between membranes. In this article we review examples to highlight the capabilities and accomplishments of X-ray scattering for the determination of membrane structure. X-ray diffraction gives quantitative information about partitioning of a small molecule, ethanol, in lipid bilayers. By taking amyloid- β peptides as examples, it is demonstrated that the position of peptides in lipid membranes can be determined with high precision. Confinement between membranes can organize molecules, as is the case for a mono-nucleotide, adenosine monophosphate, and the resulting pattern might be important to understand the formation of short RNA strands. With new approaches and techniques, and the increasingly powerful and capable devices, X-ray diffraction will continue to be the work horse for the determination of molecular structure in biological materials.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.189
Threshold uncertainty score0.651

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.004
GPT teacher head0.238
Teacher spread0.233 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2014
Admission routes1
Has abstractyes

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