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Record W2368784103

Clone the conserved sequence of CDPK from Glycine soja and analysis the sequence

2006· article· en· W2368784103 on OpenAlexaff
Yong Li

Bibliographic record

VenueDongbei Nongye Daxue xuebao · 2006
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPhotosynthetic Processes and Mechanisms
Canadian institutionsScience North
Fundersnot available
KeywordsGeneBiologyProtein kinase AGeneticsKinaseConserved sequenceSequence analysisPeptide sequenceclone (Java method)Sequence alignmentMolecular biology
DOInot available

Abstract

fetched live from OpenAlex

CDPK(Ca2+-dependent,calmodulin independent protein kinase) is the crucial protein kinase in plant calcium signal transduction,and play important role in osmotic stresses.Here based on the strategy with homologous sequences clone new gene.According to the published DNA sequences,alignment them,designed two pairs nest-primers in the higher homologous regions of CDPKs,combinated touch-down PCR and nest PCR to clone the conserved sequence of CDPK from Glycine soja.Eventually have gotten wild soybean CDPK conserva-tive sequence,through analysing,it included the conserved catalytic domain that is typical of serine/threonine protein kinases and a Ca2+-binding domain that contains three typical EF hand structures those different from other protein kinases.What′s more,the DNA sequence exhibited significant similarity to VrCDPK(U08140),reaches 94% similarity.Result has proved,also have CDPK gene in wild bean,and have established foundation to get the all length genes through the methods such as RACE in wild soybean.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.013

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0040.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.245
Teacher spread0.231 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2006
Admission routes1
Has abstractyes

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