Genome-Wide Identification and Bioinformatics Analysis of NAC Gene Family in Tomato
Bibliographic record
Abstract
NAC proteins belong to one of the largest plant-specific transcription factor families and play diverse roles in plant development processes,organ formation,response to biotic or abiotic cues,and hormone signalling.NAC proteins of tomato were genome-wide identified,the distribution on the chromosome,the structure and function of protein were analyzed.102 predicted proteins constitute the tomato NAC transcrition factor family,which can be clustered into 12 groups.25 of them belong to TNAC subfamiliy(a novel NAC subfamily which was first identified in tobacco),and other members have the samilar classification with Arabidopsis thaliana.Conservative motif analysis indicates that there are seven conserve NAM motif in N terminal.The physical and chemical properties and structure analysis showed that most of the tomato NAC proteins are hydrophilic proteins,the secondary structure of 102 predicted NAC proteins was mainly rendom coil,and alpha helix,beta sheet and beta turn are scattered to the whole protein sequence,there is no rule in each subfamily.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.001 | 0.001 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".