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Record W2400095388 · doi:10.1101/055558

Bringing Elton and Grinnell Together: a quantitative framework to represent the biogeography of ecological interaction networks

2016· preprint· en· W2400095388 on OpenAlexafffund
Dominique Gravel, Benjamin Baiser, Jennifer A. Dunne, Jens‐Peter Kopelke, Neo D. Martinez, Tommi Nyman, Timothée Poisot, Daniel B. Stouffer, Jason M. Tylianakis, Spencer A. Wood, Tomas Rosling

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2016
Typepreprint
Languageen
FieldAgricultural and Biological Sciences
TopicPlant and animal studies
Canadian institutionsUniversité du Québec à MontréalUniversité de MontréalUniversité de Sherbrooke
FundersNatural Sciences and Engineering Research Council of CanadaScience Foundation IrelandSanta Fe InstituteNational Science Foundation
KeywordsBiogeographyNicheEcologyEcological networkEcological nicheEnvironmental niche modellingBiologyEcosystemHabitat

Abstract

fetched live from OpenAlex

Abstract Biogeography has traditionally focused on the spatial distribution and abundance of species. Both are driven by the way species interact with one another, but also by the way these interactions vary across time and space. Here, we call for an integrated approach, adopting the view that community structure is best represented as a network of ecological interactions, and show how it translates to biogeography questions. We propose that the ecological niche should encompass the effect of the environment on species distribution (the Grinnellian dimension of the niche) and on the ecological interactions among them (the Eltonian dimension). Starting from this concept, we develop a quantitative theory to explain turnover of interactions in space and time i.e . a novel approach to interaction distribution modelling. We apply this framework to host parasite interactions across Europe and find that two aspects of the environment (temperature and precipitation) exert a strong imprint on species co-occurrence, but not on species interactions. Even where species co-occur, interaction proves to be stochastic rather than deterministic, adding to variation in realized network structure. We also find that a large majority of host-parasite pairs are never found together, thus precluding any inferences regarding their probability to interact. This first attempt to explain variation of network structure at large spatial scales opens new perspectives at the interface of species distribution modelling and community ecology.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.012
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.005
Threshold uncertainty score0.022

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.012
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0030.001
Science and technology studies0.0010.003
Scholarly communication0.0030.005
Open science0.0010.002
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.031
GPT teacher head0.232
Teacher spread0.202 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations17
Published2016
Admission routes2
Has abstractyes

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