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Heatmapper: web-enabled heat mapping for all

2016· article· en· 2,437 citations· W2408483783 on OpenAlex· 10.1093/nar/gkw419

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Machine scores (provisional)

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Opus teacher head0.052
GPT teacher head0.341
Teacher spread
0.289 · how far apart the two teachers sit on this one work
Validation status
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Abstract

Heatmapper is a freely available web server that allows users to interactively visualize their data in the form of heat maps through an easy-to-use graphical interface. Unlike existing non-commercial heat map packages, which either lack graphical interfaces or are specialized for only one or two kinds of heat maps, Heatmapper is a versatile tool that allows users to easily create a wide variety of heat maps for many different data types and applications. More specifically, Heatmapper allows users to generate, cluster and visualize: (i) expression-based heat maps from transcriptomic, proteomic and metabolomic experiments; (ii) pairwise distance maps; (iii) correlation maps; (iv) image overlay heat maps; (v) latitude and longitude heat maps and (vi) geopolitical (choropleth) heat maps. Heatmapper offers a number of simple and intuitive customization options for facile adjustments to each heat map's appearance and plotting parameters. Heatmapper also allows users to interactively explore their numeric data values by hovering their cursor over each heat map cell, or by using a searchable/sortable data table view. Heat map data can be easily uploaded to Heatmapper in text, Excel or tab delimited formatted tables and the resulting heat map images can be easily downloaded in common formats including PNG, JPG and PDF. Heatmapper is designed to appeal to a wide range of users, including molecular biologists, structural biologists, microbiologists, epidemiologists, environmental scientists, agriculture/forestry scientists, fish and wildlife biologists, climatologists, geologists, educators and students. Heatmapper is available at http://www.heatmapper.ca.

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The record

Venue
Nucleic Acids Research
Topic
Metabolomics and Mass Spectrometry Studies
Field
Biochemistry, Genetics and Molecular Biology
Canadian institutions
National Institute for NanotechnologyUniversity of Alberta
Funders
Canadian Institutes of Health Research
Keywords
Computer scienceUploadGeographic coordinate systemGraphical user interfaceInformation retrievalDatabaseComputer graphics (images)Data miningWorld Wide WebCartographyGeography
Has abstract in OpenAlex
yes