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Record W2415312861 · doi:10.1039/9781849734363-00162

Sample Preparation and Profiling: Probing the Kinome for Biomarkers and Therapeutic Targets: Peptide Arrays for Global Phosphorylation-Mediated Signal Transduction

2013· book-chapter· en· W2415312861 on OpenAlexaff
Jason Kindrachuk, Scott Napper

Bibliographic record

Venuenot available
Typebook-chapter
Languageen
FieldMedicine
TopicMonoclonal and Polyclonal Antibodies Research
Canadian institutionsUniversity of Saskatchewan
Fundersnot available
KeywordsKinomeComputational biologyKinaseDrug developmentBiologyProfiling (computer programming)Signal transductionDrug discoveryPhosphorylationBioinformaticsCell biologyDrugComputer sciencePharmacology

Abstract

fetched live from OpenAlex

There is a growing appreciation of the intimate relationship between protein kinase activities and human health. Cellular kinases, individually or as a collective unit (the kinome), perform indispensable roles in regulating complex biology, underlie many disease states, and represent high-priority drug targets. Recent trends of drug development, where kinase inhibitors are becoming increasingly common, highlight the potential therapeutic opportunities made available through kinase investigations. There is also considerable evidence that understanding cellular responses at the level of kinase activity has the potential to reveal complex biology as well as identify biomarkers and therapeutic targets. With these appreciations, there is growing interest in the development of technologies that enable high-throughput characterization of kinome activity. Of these emerging technologies peptide arrays are proving a robust and adaptable tool for kinome characterizations.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.007
Threshold uncertainty score0.024

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.001
Science and technology studies0.0000.001
Scholarly communication0.0010.002
Open science0.0010.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0070.010

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.038
GPT teacher head0.300
Teacher spread0.262 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2013
Admission routes1
Has abstractyes

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