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Record W2424828312 · doi:10.1139/cjps-2015-0253

Estimation of genotypic correlation and heritability of apricot traits, using restricted maximum likelihood in repeated measures data

2016· article· en· W2424828312 on OpenAlexvenueno aff
Ahmad Ismaili, Farhad Karami, Omidali Akbarpour, Abdolhossein Rezaei Nejad

Bibliographic record

VenueCanadian Journal of Plant Science · 2016
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Physiology and Cultivation Studies
Canadian institutionsnot available
FundersForskningsrådet om Hälsa, Arbetsliv och Välfärd
KeywordsRestricted maximum likelihoodHeritabilityCovarianceStatisticsMixed modelMathematicsAnalysis of covarianceGenetic correlationCorrelationRandom effects modelGeneralized linear mixed modelMaximum likelihoodBiologyGenetic variationGeneticsMeta-analysis

Abstract

fetched live from OpenAlex

In estimation of genetic parameters in perennial tree species on the basis of analysis of variance (ANOVA), heterogeneity of years and genotype × environment interaction for data sets during the juvenility to maturity life period is ignored. Therefore, a linear mixed model based on restricted maximum likelihood (REML) approximation for modeling of covariance structure of longitudinal data can improve our ability to analyze repeated measures data. In the present research, a modeling of variance-covariance structure by mixed model based on the REML approach has been used for characteristics of 26 apricot genotypes recorded during three years. Fitting unstructured covariance (UN) models for all traits indicated a great heterogeneity of variances among repeated years and the trends of response variables in the genotypes (except for RWC) was due to imperfect correlation of subjects measured in different years. Based on the same structure, positive correlations were estimated among fruit set, potassium content, and yield of pistil in repetitive years, and most traits showed high heritability estimation. To our knowledge, this is the first report in plant that genotypic correlation and heritability and their standard errors are estimated in a repeated measures data over years using REML approximation.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.009
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.028

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0050.009
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.055
GPT teacher head0.234
Teacher spread0.179 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2016
Admission routes1
Has abstractyes

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