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Record W2461485637 · doi:10.1186/s13717-016-0054-4

Invasion by Conyza sumatrensis alters soil microbial community structure in urban ecosystems

2016· article· en· W2461485637 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

fundA Canadian funder is recorded on the work.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueEcological Processes · 2016
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicMycorrhizal Fungi and Plant Interactions
Canadian institutionsnot available
FundersCanadian Bureau for International Education
KeywordsBiologySpecies richnessTemperature gradient gel electrophoresisEcosystemEcology16S ribosomal RNABacteria

Abstract

fetched live from OpenAlex

Whether invasive plants stimulate or inhibit the soil microbial diversity is still an open question. Despite large-scale invasion by Conyza sumatrensis (Retz.) E. Walker in the urban ecosystems of the Srinagar city of the Kashmir Himalayan region, limited information exists on its impact, particularly, on the belowground microbial diversity. The present study was thus conducted to compare the soil microbial (bacterial and ascomycetous fungal) diversity between the sites invaded by C. sumatrensis and un-invaded (control) sites. Soil metagenome was extracted from C. sumatrensis invaded and un-invaded plots at the three study sites. A total of six plots (5 × 5 m each in size), including three invaded by C. sumatrensis and three un-invaded plots were nested within each study site. DNA after amplification was subject to denaturing gradient gel electrophoresis (DGGE); the bands were extracted from the DGGE gel, re-amplified, and sequenced for identification of the species. The number of bacterial species was reduced in the invaded plots at two out of the three sites while as it was relatively higher in the un-invaded plots with many species exclusively found in these plots. Fungal species richness was higher in the invaded plots compared to the un-invaded plots at all the three sites. Also, more fungal species were found to occur exclusively in the invaded plots without being represented in the un-invaded plots. Invasion by C. sumatrensis alters soil microbial community structure in the urban ecosystems in the Kashmir Himalaya. How this species does so and what benefits does it draw from such alteration promise to be an interesting future discourse.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.552
Threshold uncertainty score0.994

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0080.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.202
Teacher spread0.188 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it