The structure of the manganese oxide on the sheath of the bacterium <i>Leptothrix discophora</i> : An XAFS study
Bibliographic record
Abstract
In natural waters, manganese oxides (MnOx) are important in mediating the bioavailability of trace metals such as Ni, Cu, Zn, Cd, and Pb, as these metals readily adsorb to the MnO x surface. Manganese from a variety of anthropogenic sources usually enters the aquatic environment in dissolved form as Mn 2+ . It is subsequently oxidized under oxic and neutral (pH = 6-7) conditions. Often this oxidation is catalyzed by bacteria, such as Leptothrix discophora, as part of their natural metabolic process. Mn K-edge X-ray Absorption Fine Structure Spectroscopy (XAFS) was used to investigate the local structure of manganese oxide on the sheath produced by the bacterium Leptothrix discophora SP-6. The features observed in the near edge region of the Mn K-edge spectrum indicate the presence of three oxidation states of manganese: Mn 2+ , Mn 3+ , and Mn 4+ . Fitting the experimental XAFS data identifies the bacterial MnO x as being composed of single-layer microcrystals with layers similar to those occurring in Na-birnessite. Some MnO 6 octahedra might lie outside the layer plane, sharing corners with those in the layer plane. X-ray diffraction results for the same samples are consistent with the single-layer structure.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".