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Record W2474203492 · doi:10.1021/acs.iecr.6b03331

Identification of Dynamic Metabolic Flux Balance Models Based on Parametric Sensitivity Analysis

2017· article· en· W2474203492 on OpenAlexaff
Ricardo Martinez Villegas, Hector Budman, Ali Elkamel

Bibliographic record

VenueIndustrial & Engineering Chemistry Research · 2017
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMicrobial Metabolic Engineering and Bioproduction
Canadian institutionsUniversity of Waterloo
FundersConsejo Nacional de Ciencia y Tecnología, GuatemalaConsejo Nacional de Ciencia y Tecnología
KeywordsSensitivity (control systems)Parametric statisticsFlux balance analysisIdentification (biology)Flux (metallurgy)Parametric modelMaximizationBiological systemComputer scienceMathematicsMathematical optimizationStatisticsChemistryEngineering

Abstract

fetched live from OpenAlex

This paper deals with robust identification of dynamic metabolic flux model parameters based on parametric sensitivity analysis. First, the parameters in the model are ranked based on a global parametric sensitivity analysis to assess whether a subset of the parameters can be eliminated from further analysis. Then, the remaining significant parameters are identified based on the maximization of an overall parametric sensitivity measure subject to set based constraints that are derived from available data. The proposed method is illustrated on a case study of a model describing the diauxic growth of Escherichia coli in a batch culture.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.785

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.045
GPT teacher head0.325
Teacher spread0.280 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2017
Admission routes1
Has abstractyes

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