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Record W2476851737 · doi:10.1021/bk-2006-0934.ch001

Fishing for Proteins with Magnetic Cellulosic Nanocrystals

2006· book-chapter· en· W2476851737 on OpenAlexafffund
R. H. Marchessault, Glen Bremner, Grégory Chauve

Bibliographic record

VenueACS symposium series · 2006
Typebook-chapter
Languageen
FieldEngineering
TopicCharacterization and Applications of Magnetic Nanoparticles
Canadian institutionsMcGill University
FundersNatural Sciences and Engineering Research Council of CanadaMcGill University
KeywordsSuperparamagnetismNanocrystalFerrousMagnetiteChemistryLigand (biochemistry)Materials scienceChemical engineeringCrystallographyNanotechnologyMagnetizationBiochemistryMagnetic fieldOrganic chemistryMetallurgyPhysics

Abstract

fetched live from OpenAlex

A key to proteomics exploitation is magnetic separation of target proteins in a sea of others. The process is similar to fishing, where the target protein is like a specific type of fish. An antigen, covalently linked on a magnetic nanocrystal, is "the bait and hook"; the fishing line is simulated by an applied magnetic field. By selective binding the target protein can be caught, isolated and released from the nanocrystal support once the interaction of antigen-antibody is neutralized. Microcrystalline cellulose (MCC) is responsive to functionalization, as required to tether the desirable bioactive ligand. Chitin nanocrystals with some free surface amino groups are also as suitable as nanocrystal support. To render MCC magnetic, ferrous iron is adsorbed and converted to ferrous hydroxide, which is then oxidized with KNO 3 to form superparamagnetic magnetite. From the magnetization curves, the particle size distribution and magnetite content of ferrites in the polysaccharide matrix can be derived. A trial fishing experiment to isolate a target protein used a magnetized MCC platform to which Protein A, a specific ligand of Immunoglobulin G, IgG, was attached. The resulting magnetic platform, captured the target IgG which was magnetically separated from the supernatant. IgG was isolated by screening the non-bonded interactions between IgG and its specific ligand.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.006
Threshold uncertainty score0.019

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0060.005

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.169
Teacher spread0.163 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations7
Published2006
Admission routes2
Has abstractyes

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