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Record W2491118480 · doi:10.1385/1-59259-990-7:171

Detection of Hepatitis A Virus and Rotavirus Using Nucleic Acid Sequence-Based Amplification

2008· book-chapter· en· W2491118480 on OpenAlexaff
Julie Jean, Ismaı̈l Fliss

Bibliographic record

VenueMethods in biotechnology · 2008
Typebook-chapter
Languageen
FieldMedicine
TopicViral gastroenteritis research and epidemiology
Canadian institutionsUniversité Laval
Fundersnot available
KeywordsNASBARotavirusVirologyNorovirusHepatitis a virusBiologyVirusHepatitis AOutbreakNucleic acidHuman viromeTransmission (telecommunications)MicrobiologyRNAHepatitisGenomeGeneGenetics

Abstract

fetched live from OpenAlex

Viral food-borne illnesses have become very common in humans worldwide. Three viruses—noroviruses, rotavirus, and hepatitis A virus (HAV)—are implicated frequently in food-borne illness and have been ranked among the top 10 causes of food-borne disease over the past 10 years. The most common food vehicles for the transmission of enteric viruses to humans are shellfish, fruits, and vegetables. Foods may be contaminated by water tainted with untreated sewage or by contact with infected human food handlers. Virus concentrations in foods are usually low, as they are not able to multiply in situ . Therefore, the ability to detect traces of viruses in foods is essential in the development of tools for the investigation and possible prevention of viral disease outbreaks. Molecular approaches based on the amplification of viral RNA have been proposed for the specific and ultrasensitive detection of enteric viruses in foods. Nucleic acid sequence-based amplification (NASBA) is one of these molecular techniques showing great promise in viral detection. In this chapter, we describe two applications using NASBA techniques for the detection of hepatitis A virus and rotavirus.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.006
Threshold uncertainty score0.021

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0010.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0060.009

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.129
GPT teacher head0.408
Teacher spread0.279 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2008
Admission routes1
Has abstractyes

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