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Record W2499253582 · doi:10.1016/j.jalz.2015.08.053

P4‐225: Relation of plasmalogens, ApoE genotype, and Alzheimer's disease pathology to cognition: A post‐mortem analysis

2015· article· en· W2499253582 on OpenAlexaff
Dayan B. Goodenowe, Vijitha Senanayake, Bassirou Chitou, Tara Smith, Asuka Mochizuki, Sue Leurgans, David A. Bennett

Bibliographic record

VenueAlzheimer s & Dementia · 2015
Typearticle
Languageen
FieldMedicine
TopicFolate and B Vitamins Research
Canadian institutionsPhenomenome Discoveries (Canada)
Fundersnot available
KeywordsApolipoprotein EInternal medicineNeuropathologyPsychologyPathologyDementiaAlzheimer's diseaseCognitionPlasmalogenEndocrinologyNeurofibrillary tangleCognitive declineMedicineSenile plaquesNeuroscienceDiseaseBiologyBiochemistryPhospholipid

Abstract

fetched live from OpenAlex

Presence of the ApoE ε4 allele, ethanolamine plasmalogen (PlsEtn) levels, and amyloid plaques or neurofibrillary tangles density in the brain are associated with the severity of dementia and AD pathology. The independent and combined associations of these factors on cognition and AD pathology was investigated. PlsEtn, amyloid, tangles, ApoE genotype, and mRNA transcripts for enzyme, and transport proteins involved in plasmalogen synthesis were determined in the temporal cortex of 100 subjects who had completed comprehensive cognitive testing prior to death. Subjects were grouped into one of three ApoE subgroups (ε2=ε2ε3, ε3=ε3ε3, ε4=ε3ε4+ ε4ε4) and ε3 was used as the reference. After adjusting for only demographic variables (age, education, gender), the key variables associated with cognition were: docosahexaenoic acid (DHA)-PlsEtn (Coef:0.620, p=8.7E-09, r=0.329, n=99), tangles (Coef: -0.552, p=4.0E-06, r=0.267, n=99), amyloid (Coef: -0.394, p=1.1E-04, r=0.150, n=99), ApoE ε4 (Coef: -0.369, p=4.2E-03, r=0.131, n=91), Dihydroxyacetone phosphate alkyltransferase (DHAPAT, Coef: 0.307, p=2.7E-02, r=0.109, n=94). Neither amyloid nor ApoE ε4 was associated with cognition in combined models of these variables where brain DHA-PlsEtn level, tangle density and age showed independent associations with cognition. ApoE ε4 was the dominant variable associated with amyloid (Coef: 1.185, p=5.3E-07, r=0.297, n=91). Overall, 46% of the variance in cognition was associated with DHA-PlsEtn, tangles, DHAPAT, and age. Amyloid (Coef:-0.025 p=1.4E-03, r=0.084, n=99), ApoE ε4 (Coef: -0.044, p=2.1E-02, r=0.081, n=92), and tangles (Coef:-0.044 p=1.1E-04, r=0.153, n=100) were associated with DHA-PlsEtn levels. Of the variables investigated, temporal cortex DHA-PlsEtn level exhibited the strongest association with cognition. Only tangles and age were associated with cognition independent of brain DHA-PlsEtn levels.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.049
GPT teacher head0.313
Teacher spread0.264 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2015
Admission routes1
Has abstractyes

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