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Record W2511842713 · doi:10.1101/071993

How ecological networks evolve

2016· preprint· en· W2511842713 on OpenAlexaff
Timothée Poisot, Daniel B. Stouffer

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2016
Typepreprint
Languageen
FieldAgricultural and Biological Sciences
TopicPlant and animal studies
Canadian institutionsUniversité de MontréalMontreal Biodome
Fundersnot available
KeywordsEcological networkEcologyExtant taxonBiological dispersalBiologyEvolutionary biologyEcosystem

Abstract

fetched live from OpenAlex

Ecological networks represent the backbone of biodiversity. As species diversify over macro-evolutionary time-scales, the structure of these networks changes; this happens because species are gained and lost, and therefore add or remove interactions in their communities. The mechanisms underlying such dynamic changes in ecological network structure, however, remain poorly understood. Here we show that several types of ecological interactions share common evolutionary mechanisms that can be parametrised based on extant interaction data. In particular, we found that a model mimicking birth-death processes for species interactions describes the structure of extant networks remarkably well. Moreover, the various types of ecological interactions we considered—seed dispersal, herbivory, parasitism, bacteriophagy, and pollination—only differed in the position they occupy in the parameters’ multi-dimensional space. Notably, we found no clustering of parameters values between antagonistic and mutualistic interactions. Our results provide a common modelling framework for the evolution of ecological networks that we anticipate will contribute to the greater consideration of the explicit role played by species interactions in models of macro-evolution and adaptive radiations.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.014
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: Theoretical or conceptual
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.006
Threshold uncertainty score0.017

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.014
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.001
Science and technology studies0.0010.002
Scholarly communication0.0060.010
Open science0.0010.002
Research integrity0.0020.001
Insufficient payload (model declined to judge)0.0050.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.028
GPT teacher head0.188
Teacher spread0.159 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designTheoretical or conceptual
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations14
Published2016
Admission routes1
Has abstractyes

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