A Computational Study of the Protoisomerization of Indigo and Its Imine Derivatives
Bibliographic record
Abstract
The protoisomerization (isomerization induced by protonation) mechanisms of indigo as well as indigo di- and monoimine derivatives were investigated using computational chemistry. Both density functional theory (M06-2X) and wave function theory (GMC-QDPT) methods were used to obtain reliable results. A solvation model (C-PCM with CH2Cl2 solvent) was employed to mimic the actual environment of the isomerization. The calculations reveal that the protoisomerizations of both the indigo and its imine derivatives are thermodynamically favorable. However, the energy barriers for rotating the double bonds in the derivatives are found to be lower than the one for indigo. More importantly, the imine derivatives undergo one-step isomerization, whereas a two-step process is predicted for indigo itself. The computational results provide insightful explanation for the different protoisomerization propensities of the parent indigo and its imine derivatives observed in experiment.
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How this classification was reachedexpand
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one teacher head, not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".