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Record W2535511171 · doi:10.1109/itw2.2006.323799

Construction of Optimal Edit Metric Codes

2006· article· en· W2535511171 on OpenAlexaff
Sheridan Houghten, Dan Ashlock, Jessie Lenarz

Bibliographic record

Venuenot available
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicDNA and Biological Computing
Canadian institutionsUniversity of GuelphBrock University
FundersNational Science Foundation
KeywordsEdit distanceHamming distanceHamming codeBlock codeLinear codeHamming boundConcatenated error correction codeComputer scienceLongest common subsequence problemMetric (unit)Code wordAlgorithmMathematicsTheoretical computer scienceDiscrete mathematicsDecoding methods

Abstract

fetched live from OpenAlex

The edit distance between two strings is the minimal number of substitutions, deletions, or insertions required to transform one string into another. An error correcting code over the edit metric includes features from deletion-correcting codes as well as the more traditional codes defined using Hamming distance. Applications of edit metric codes include the creation of robust tags over the DNA alphabet. This paper explores the theory underlying edit metric codes for small alphabets. The size of a sphere about a word is heavily dependent on its block structure, or its partition into maximal subwords of a single symbol. This creates a substantial divergence from the theory for the Hamming metric. An optimal code is one with the maximum possible number of codewords for its length and minimum distance. We provide tables of bounds on code sizes for edit codes with short length and small alphabets. We describe issues relating to exhaustive searches and present several heuristics for constructing codes

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.018
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: Theoretical or conceptual
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.005
Threshold uncertainty score0.015

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.018
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.002
Science and technology studies0.0010.001
Scholarly communication0.0020.002
Open science0.0010.003
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0050.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.221
Teacher spread0.215 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designTheoretical or conceptual
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations18
Published2006
Admission routes1
Has abstractyes

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