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Mixed Fields on RHD Typing As an Indicator of Malignancy-Associated Loss of Heterozygosity on Chromosome 1p in Myeloid Neoplasm

2014· article· en· W2536240519 on OpenAlexaffabout
Signy Chow, Jacob Pendergrast, Gorka Ochoa‐Garay, Vikas Gupta, Muhammad Ejaz Munir, Cuihong Wei, Kenneth J. Craddock, Suzanne Kamel‐Reid, Christine Cserti‐Gazdewich

Bibliographic record

VenueBlood · 2014
Typearticle
Languageen
FieldMedicine
TopicAcute Myeloid Leukemia Research
Canadian institutionsPrincess Margaret Cancer CentreUniversity of Toronto
Fundersnot available
KeywordsMedicineBone marrowLeukemiaMyeloid leukemiaMalignancyMyeloidPathologyMyeloproliferative neoplasmInduction chemotherapyImmunologyGastroenterologyInternal medicineChemotherapyMyelofibrosis

Abstract

fetched live from OpenAlex

Abstract Background Spontaneous loss of RHD expression is unusual and may present on routine RHD typing with new “mixed field” (separate positive and negative subpopulation) reactions. Its detection has practical and mechanistic implications for underlying pathology, and such events have been associated with the development or progression of malignant disorders. Case A 49-year-old gentleman with Acute Myelogenous Leukemia (AML) underwent standard induction chemotherapy with cytarabine and daunorubicin, achieving a remission. He moved from Saudi Arabia to Canada and presented to our center with an infected central venous catheter, whereupon a repeat marrow was performed, confirming remission (myeloblasts <5%) without peripheral blood count recovery. Review of the original diagnostic bone marrow revealed a predominance of promonocytes and monocytes, raising suspicions of pre-existing chronic myelomonocytic leukemia (CMML), while the presence of splenomegaly prompted investigation for a myeloproliferative neoplasm, wherein JAK2 and BCR-ABL testing ultimately proved negative. No cytogenetic abnormalities were noted at diagnosis or post-induction. His presenting transfusion laboratory sample typed as O, RHD-positive with a negative red cell antibody screen, and stable repeat grouping for two months. Platelet transfusion refractoriness developed (PRA 99%), and he qualified for HLA-matched platelets. Six months after dignosis, eleven weeks after last red cell transfusion (pRBC), and 44 days after the last blood bank sample, his AML relapsed and he was then found to have mixed field reactions on RHD grouping, with two distinct populations of O+ and O- cells. Cytogenetic re-analysis of marrow did not demonstrate any abnormalities by G-banding. Methods Relapse versus post-re-induction bone marrow specimens with buccal mucosa serving as the non-hematopoeitic control were assessed by RH genotyping and chromosome 1p microsatellite mapping to deduce the basis for leukemia-associated loss of RHD expression. Results Genotyping analysis of peripheral blood demonstrated the RH genotype ccEe with D (R2r), although the ratio of e/E was out of the usual range for heterozygosity, with e predominant over E. Repeat testing with alternative sequencing primers ruled out unequal amplification of allele-specific polymorphisms at primer sites, while the absence of other out–of-range data for other antigens excluded chimerism. With the mixed field reactions indicating loss of the RHD, this suggested a specific deletion of an entire DcE (R2) allele at a clonal pre-erythroid level. Microsatellite analysis on DNA extracted from non-myeloid tissue (buccal mucosa) compared to DNA extracted from bone marrow sample at relapse demonstrated loss of heterozygosity (LOH) at four of six informative loci, allowing for mapping of a putative chromosomal region of deletion (Figure 2). Conclusions LOH on chromosome 1 has been shown to be an important mechanism of RHD loss.[1] While such loss may be benign, the role of LOH in leukemogenesis has also been demonstrated,[2] as in this case. Alteration in RH expression may be either a surrogate for relapsed malignancy or the effect of an ongoing clonal evolutionary process. Figure 1 Figure 1. Figure 2 Figure 2. [1] Kormoczi GF, Dauber EM, Haas OA, Legler TJ, Clausen FB, Fritsch G, Raderer M, Buchta C, Petzer AL, Schonitzer D, Mayr WR, Gassner C. Mosaicism due to myeloid lineage restricted loss of heterozygosity as cause of spontaneous Rh phenotype splitting. Blood 2007;110: 2148-57. [2] Lahortiga I, Vazquez I, Belloni E, Roman JP, Gasparini P, Novo FJ, Zudaire I, Pelicci PG, Hernandez JM, Calasanz MJ, Odero MD. FISH analysis of hematological neoplasias with 1p36 rearrangements allows the definition of a cluster of 2.5 Mb included in the minimal region deleted in 1p36 deletion syndrome. Hum Genet 2005;116: 476-85 Disclosures No relevant conflicts of interest to declare.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.273
Teacher spread0.255 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2014
Admission routes2
Has abstractyes

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