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Record W2541366720 · doi:10.1101/082982

Optimal structure of heterogeneous stem cell niche: The importance of cell migration in delaying tumorigenesis

2016· preprint· en· W2541366720 on OpenAlexaff
Leili Shahriyari, Ali Mahdipour–Shirayeh

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2016
Typepreprint
Languageen
FieldMedicine
TopicCancer Cells and Metastasis
Canadian institutionsUniversity of Waterloo
FundersNational Science Foundation
KeywordsStem cellBiologyNicheCell biologyStem cell theory of agingAdult stem cellStem cell nicheCancer stem cellStem cell factorCellular differentiationProgenitor cellGeneticsGeneBiochemistry

Abstract

fetched live from OpenAlex

Abstract Studying the stem cell niche architecture is a crucial step for investigating the process of oncogenesis and obtaining an effective stem cell therapy for various cancers. Recently, it has been observed that there are two groups of stem cells in the stem cell niche collaborating with each other to maintain tissue homeostasis. One group comprises the border stem cells, which is responsible to control the number of non-stem cells as well as stem cells. The other group, central stem cells, regulates the stem cell niche. In the present study, we develop a bi-compartmental stochastic model for the stem cell niche to study the spread of mutants within the niche. The analytic calculations and numeric simulations, which are in perfect agreement, reveal that in order to delay the spread of mutants in the stem cell niche, a small but non-zero number of stem cell proliferations must occur in the central stem cell compartment. Moreover, the migration of border stem cells to the central stem cell compartment delays the spread of mutants. Furthermore, the fixation probability of mutants in the stem cell niche is independent of types of stem cell division as long as all stem cells do not divide fully asymmetrically. Additionally, the progeny of central stem cells have a much higher chance than the progeny of border stem cells to take over the entire niche.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.221
Teacher spread0.210 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2016
Admission routes1
Has abstractyes

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