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Record W2545351807 · doi:10.1111/syen.12216

Cryptic diversity in the long‐horn moth <i>Nemophora degeerella</i> (Lepidoptera: Adelidae) revealed by morphology, <scp>DNA</scp> barcodes and genome‐wide <scp>ddRAD</scp> ‐seq data

2016· article· en· W2545351807 on OpenAlexfundno aff
Mikhail V. Kozlov, Marko Mutanen, Kyung Min Lee, Peter Huemer

Bibliographic record

VenueSystematic Entomology · 2016
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicLepidoptera: Biology and Taxonomy
Canadian institutionsnot available
FundersOntario Ministry of Research and InnovationNatural Sciences and Engineering Research Council of CanadaOskar Öflunds StiftelseGenome CanadaSuomen KulttuurirahastoGovernment of CanadaAcademy of FinlandOntario Genomics Institute
KeywordsBiologySpecies complexDNA barcodingCytochrome c oxidase subunit ITaxonLepidoptera genitaliaZoologyMitochondrial DNAEvolutionary biologyTaxonomy (biology)EcologyPhylogenetic treeGenetics

Abstract

fetched live from OpenAlex

Abstract The growth of DNA barcode libraries has now revealed many cases of potentially cryptic diversity in various groups of generally well‐studied European Lepidoptera. In this paper, we revise a complex of cryptic species, which were formerly all classified as one species, Nemophora degeerella (Linnaeus, 1758). We found that this complex consists of three taxa: N. degeerella (Linnaeus, 1758), which is widely distributed across temperate Europe north of the Alps, from Portugal to Finland, Central Russia and Ukraine; N. scopolii sp.n. , which inhabits central and southern Europe (Slovakia, southern Germany, Austria, Slovenia and Italy); and N. deceptoriella sp.n. from the Caucasus (Russia and Georgia). These species are separated by subtle but stable external morphological characters (forewing size and pattern, relative size of the labial palpus, scapus and compound eyes) and divergent cytochrome c oxidase subunit I ( COI) lineages, with at least one geographical region (Austria to southern Germany and Slovakia) where two of these species ( N. degeerella and N. scopolii ) co‐occur. The characters of the male genitalia and four nuclear markers ( CAD , EF ‐1a, MDH and MDH ; available for two of the three taxa) did not support the separation of the taxa, but data derived from 1363 and 390 restriction‐site associated DNA sequencing ( RAD ) loci (altogether consisting of 259 311 and 71 778 bp) of four specimens of each N. degeerella and N. scopolii , which were collected mostly from the contact zone strongly supported their distinctiveness as independent lineages. Our study is one of the still quite few cases where morphological and COI analyses are supplemented with nuclear data, and one of the very first cases where next‐generation sequencing based on double‐digest RAD sequencing ( ddRAD ‐seq) methods have been applied to address taxonomic questions in insects. This published work has been registered in ZooBank : http://zoobank.org/urn:lsid:zoobank.org:pub:FBA1953A‐412E‐4395‐BB36‐B650621DD0D0 .

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.023
GPT teacher head0.239
Teacher spread0.216 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations25
Published2016
Admission routes1
Has abstractyes

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