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Record W2550222366 · doi:10.11646/zootaxa.4196.3.9

Photography-based taxonomy is inadequate, unnecessary, and potentially harmful for biological sciences

2016· article· en· W2550222366 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

fundA Canadian funder is recorded on the work.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueZootaxa · 2016
Typearticle
Languageen
FieldEnvironmental Science
TopicSpecies Distribution and Climate Change
Canadian institutionsnot available
FundersUniversity of Michigan-DearbornSmithsonian Conservation Biology InstituteNational Museum of Natural HistoryInstitut Teknologi BandungUniversidade Federal do Espírito SantoUniversità degli Studi di CamerinoUniversidade Federal do Rio de JaneiroMuséum National d'Histoire NaturelleUniversidade de LisboaNaturalis Biodiversity CenterUniversidade Federal do Rio Grande do SulYale UniversityUniversidade Estadual de LondrinaUniversity of TorontoSmithsonian InstitutionUniversidad Nacional de ColombiaConsejo Nacional de Investigaciones Científicas y TécnicasUniversidade Federal do ParanáUniversidad Nacional Autónoma de MéxicoUniversidade de BrasíliaUniversidade Estadual PaulistaUniversidad San Francisco de QuitoPhilipps-Universität MarburgUniversidade de São PauloGeorge Washington UniversitySouth China Normal UniversityUniversità degli Studi di Napoli Federico IICentro de Investigaciones Biológicas del NoroesteHelmholtz-Zentrum für Umweltforschung
KeywordsRebuttalPublicationTaxonomy (biology)BiologyLibrary scienceGenealogyZoologyHistoryComputer scienceArchaeologyLawPolitical science

Abstract

fetched live from OpenAlex

The question whether taxonomic descriptions naming new animal species without type specimen(s) deposited in collections should be accepted for publication by scientific journals and allowed by the Code has already been discussed in Zootaxa (Dubois & Nemésio 2007; Donegan 2008, 2009; Nemésio 2009a-b; Dubois 2009; Gentile & Snell 2009; Minelli 2009; Cianferoni & Bartolozzi 2016; Amorim et al. 2016). This question was again raised in a letter supported by 35 signatories published in the journal Nature (Pape et al. 2016) on 15 September 2016. On 25 September 2016, the following rebuttal (strictly limited to 300 words as per the editorial rules of Nature) was submitted to Nature, which on 18 October 2016 refused to publish it. As we think this problem is a very important one for zoological taxonomy, this text is published here exactly as submitted to Nature, followed by the list of the 493 taxonomists and collection-based researchers who signed it in the short time span from 20 September to 6 October 2016.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.849
Threshold uncertainty score0.975

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0260.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.066
GPT teacher head0.261
Teacher spread0.195 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it