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Record W2557458092 · doi:10.1107/s2053273314088391

First structure of a cGMP-dependent protein kinase

2014· article· en· W2557458092 on OpenAlexaff
Raymond Hui

Bibliographic record

VenueActa Crystallographica Section A Foundations and Advances · 2014
Typearticle
Languageen
FieldChemistry
TopicSynthesis and Catalytic Reactions
Canadian institutionsStructural Genomics ConsortiumUniversity of Toronto
Fundersnot available
KeywordsAllosteric regulationCooperativityProtein kinase AcGMP-dependent protein kinaseMechanism (biology)KinasePlasmodium falciparumCell biologyProtein structureChemistryBiologyBiochemistryBiophysicsMitogen-activated protein kinase kinaseEnzymeMalariaImmunologyPhysics

Abstract

fetched live from OpenAlex

PKA and PKG are two of the eponymous members of the AGC family of protein kinases as well as two of the earliest protein kinases discovered. Due largely to contributions from structural biology, the mechanism of cooperative and allosteric regulation of PKA is well understood. On the other hand, no structure of PKG from any organism has been available until recently. We present the first ever structure of PKG from the malaria parasite Plasmodium falciparum. The structure features PKG in its auto-inhibited form - a pentagonal arrangement of 4 cGMP-binding sites and the catalytic kinase domain. By comparing of this structure with PKA structures, we propose a novel mechanism of cooperativity and allostery by which Plasmodium PKG is regulated.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.009
Threshold uncertainty score0.029

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.003
Insufficient payload (model declined to judge)0.0090.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.226
Teacher spread0.219 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2014
Admission routes1
Has abstractyes

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