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The HPA-15 (Gov) Platelet Alloantigen System: Allele Frequencies in the Canadian Population.

2005· article· en· W2565902495 on OpenAlexaffabout
Kristen Chamberlain, James W. Smith, Diana Moffatt, Jane C. Moore, Donald M. Arnold, John G. Kelton

Bibliographic record

VenueBlood · 2005
Typearticle
Languageen
FieldMedicine
TopicPlatelet Disorders and Treatments
Canadian institutionsMcMaster University
Fundersnot available
KeywordsNeonatal alloimmune thrombocytopeniaAlleleImmunologyAntigenPopulationSingle-nucleotide polymorphismAllele frequencyBiologyPlatelet membrane glycoproteinPlateletTransplantationMolecular biologyMedicineGeneticsGeneInternal medicinePregnancyGenotypeFetus

Abstract

fetched live from OpenAlex

Abstract Human platelet antigens (HPAs) are genetically defined polymorphisms expressed on plasma membrane proteins. Alloimmunization following exposure to the incompatible antigen during pregnancy, or following transfusion or transplantation, can cause severe thrombocytopenia and bleeding. The Gov-a/Gov-b biallelic system is expressed on CD109, a 175kD glyco sylphosphatidylinositol-anchored glycoprotein found on platelets, endothelial cells, and activated T-cells (Kelton, 1990; Smith, 1995). Alloimmunization to Gov-a/b is implicated in neonatal alloimmune thrombocytopenia (NAT) and post-transfusion purpura (PTP), and anti-Gov antibodies have been found in polytransfused patients. The Gov-a/Gov-b alleles are encoded by an A-C single nucleotide polymorphism (SNP) at position 2108, resulting in a Tyr682Ser substitution in CD109. Sequence analysis determined that CD109 is a member of the alpha 2 macroglobulin/C3, C4, C5 family of thioester-containing proteins (Lin, 2002). The Gov antigen frequencies are expressed almost equally in the population, and European and Asian studies determined that the Gov-b allele was expressed slightly more often than the Gov-a. Based on these studies the Gov-a/Gov-b antigens were assigned to the HPA-15 system (HPA-15a/15b = Gov-b/Gov-a). South American studies found similar gene frequencies in the general population, but significantly higher frequencies for HPA-15a (0.78) in aboriginal populations (Cardone, 2004). No larger North American studies have been reported since the original report of the Gov allele frequencies based on a limited number of platelet donors (Gov-a: 0.532; Gov-b: 0.468, n=33). We used the polymerase chain reaction with sequence-specific primers (PCR-SSP) to investigate the HPA-15 allele frequencies in the Canadian population. DNA from 273 blood donors was tested using PCR-SSP. The frequency of genotypes HPA-15a/15a, 15a/15b, 15b/15b was found to be 27.84, 49.45, and 22.71 respectively. Thus the allele frequencies for the Canadian population were determined to be 0.517 for HPA-15a and 0.483 for HPA-15b. This data is similar to the frequencies reported among some European studies, and supports evidence that the HPA-15a (Gov-b) allele is expressed slightly more frequently in the general population. Initial reports investigating the Gov alloantigens localized the polymorphism to a novel platelet protein, CD109, and lack of sequence data prevented the use of genotyping studies. The original studies of the Gov antigens, which share almost equal distribution, were limited by available alloantisera and complex screening technologies. The results from this report support the relative allele frequencies for the HPA-15a/15b (Gov-b/Gov-a) antigen system, and emphasize the importance of using genotyping studies to determine allele frequencies.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.030
Threshold uncertainty score0.061

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0020.004
Science and technology studies0.0020.000
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0040.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.231
Teacher spread0.219 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2005
Admission routes2
Has abstractyes

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