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Record W2568295234 · doi:10.21037/atm.2016.12.02

The downside of human natural killer cell diversity in viral infection revealed by mass cytometry

2016· letter· en· W2568295234 on OpenAlexaff
Mir Munir A. Rahim

Bibliographic record

VenueAnnals of Translational Medicine · 2016
Typeletter
Languageen
FieldImmunology and Microbiology
TopicImmune Cell Function and Interaction
Canadian institutionsDalhousie University
Fundersnot available
KeywordsMass cytometryFlow cytometryVirologyCytometryBiologyImmunologyGeneticsGene

Abstract

fetched live from OpenAlex

Antigen-specific receptor diversity is the hallmark of an immune cell and an asset in adaptive immunity (1). In contrast, natural killer (NK) diversity appears to be detrimental to its antiviral immune functions, as reported by Strauss-Albee and colleagues (2). Adaptive T and B cell diversity is generated by the rearrangement of their receptors during development, giving rise to a vast array of antigen specificities (3). It is estimated that the total diversity of T cell receptors (TCR) generated by somatic recombination in human T cells is in the order of 10 15 –10 20 sequences (4). Unlike these adaptive immune cells, innate immune cell diversity, including NK cells, is shaped by random assortment of germline-encoded cell surface receptors. NK cell receptors come in two flavours: activating and inhibitory. Unlike T cell activation, which is mediated by the engagement of TCR and co-stimulatory receptors, NK cell activation is determined by the net balance of signals from the engagement of activating and inhibitory receptors (5). Therefore, the diversity and cell surface expression of these receptors on a per-cell basis can have a profound influence on an NK cell’s function.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0000.000
Research integrity0.0030.003
Insufficient payload (model declined to judge)0.0030.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.033
GPT teacher head0.291
Teacher spread0.258 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2016
Admission routes1
Has abstractyes

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