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Record W2570514638 · doi:10.1137/16m1077659

First Passage Statistics for the Capture of a Brownian Particle by a Structured Spherical Target with Multiple Surface Traps

2017· article· en· W2570514638 on OpenAlexafffund
Alan E. Lindsay, Andrew J. Bernoff, Michael J. Ward

Bibliographic record

VenueMultiscale Modeling and Simulation · 2017
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicDiffusion and Search Dynamics
Canadian institutionsUniversity of British Columbia
FundersNatural Sciences and Engineering Research Council of CanadaSimons FoundationNational Science Foundation
KeywordsPhysicsBrownian motionRADIUSNuclear poreParticle (ecology)Molecular physicsCytoplasmChemistryQuantum mechanics

Abstract

fetched live from OpenAlex

We study the first passage time problem for a diffusing molecule in an enclosed region to hit a small spherical target whose surface contains many small absorbing traps. This study is motivated by two examples of cellular transport. The first is the intracellular process through which proteins transit from the cytosol to the interior of the nucleus through nuclear pore complexes that are distributed on the nuclear surface. The second is the problem of chemoreception, in which cells sense their surroundings through diffusive contact with receptors distributed on the cell exterior. Using a matched asymptotic analysis in terms of small absorbing pore radius, we derive and numerically verify a high order expansion for the capacitance of the structured target which incorporates surface effects and gives explicit information on interpore interaction through a Coulomb-type discrete energy with additional logarithmic dependencies. In the large $N$ dilute surface trap fraction limit, a single homogenized Robin boundary condition $ \partial_n v + \kappa v = 0$ is derived in which $\kappa$ depends on the total absorbing fraction, the characteristic pore scale, and parameters relating to interpore interactions.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.008
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.013
Threshold uncertainty score0.026

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.008
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.001
Science and technology studies0.0010.003
Scholarly communication0.0010.002
Open science0.0020.001
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.270
Teacher spread0.254 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations107
Published2017
Admission routes2
Has abstractyes

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