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Record W2587466242 · doi:10.1111/ejn.13512

Stuttering as a trait or a state revisited: motor system involvement in persistent developmental stuttering

2017· erratum· en· W2587466242 on OpenAlexaff
Michel Belyk, Shelly Jo Kraft, Steven Brown

Bibliographic record

VenueEuropean Journal of Neuroscience · 2017
Typeerratum
Languageen
FieldPsychology
TopicStuttering Research and Treatment
Canadian institutionsMcMaster University
FundersNational Institute on Deafness and Other Communication Disorders
KeywordsStutteringTraitPsychologyDevelopmental psychologyAudiologyMedicineComputer scienceProgramming language

Abstract

fetched live from OpenAlex

This corrigendum reports an update to the meta-analysis reported in Belyk et al. (2015). The publicly-available program GingerALE contains the most widely adopted algorithm for meta-analyses by activation likelihood estimation (ALE) of functional magnetic resonance imaging (fMRI) experiments. This program was recently reported by its developers to contain long-standing implementation errors that may have affected the statistical thresholds of many published meta-analyses, including our own (Eickhoff et al., 2017). Recently, the BrainMap Development Team formally reported two long-standing implementation errors in the GingerALE software (Eickhoff et al., 2017). These errors affected published ALE analyses using False-Discovery Rate (FDR) corrections for multiple comparisons prior to May 11, 2015 (GingerALE versions prior to v.2.3.3) and cluster-wise Family-Wise Error (cFWE) corrections for multiple comparisons prior to April 26, 2016 (GingerALE versions prior to v2.3.6). The implementation errors in these versions may have caused statistical thresholds in the resultant ALE analyses to be more liberal than intended by the researchers, including in our own analysis (Belyk et al., 2015). Furthermore, subsequent research has demonstrated that voxel-wise FDR correction in the context of ALE has the undesirable properties of being simultaneously low in sensitivity to true effects and highly susceptible to false positives (Eickhoff et al., 2016). This view is supported by a broader theoretical position that voxel-wise FDR may be inappropriate for spatially smooth data, such as the data represented in ALE analyses (Chumbley & Friston, 2009). In contrast, cluster-wise approaches to statistical thresholds provide a reasonable compromise between sensitivity and conservatism. Although cluster-wise thresholding does not permit inferences at the level of individual voxels, it is more appropriate for inferences at the level of topological features (i.e., at the level of activation clusters or anatomically defined brain areas), which may be better suited to the manner in which neuroimaging data are generally interpreted. In light of the commendable degree of transparency shown by the BrainMap Development Team, it is incumbent upon cognitive neuroscientists who have used the GingerALE versions in question to issue self-corrections where published analyses have been affected. To that end, we both report a corrigendum and provide an update to our original meta-analysis. We repeated our original meta-analysis of functional neuroimaging studies of persistent developmental stuttering with the most recent version of GingerALE. Briefly, the analysis used ALE to separately describe the neural correlates of having a propensity to stutter when speaking (i.e., the trait of being a person who stutters) and the behavior of stuttering (i.e., the state of currently exhibiting a stutter). Readers are referred to the original publication for methodological details (Belyk et al., 2015). Three changes were made from the original meta-analysis. First, we used the most recent version of the GingerALE software in which major implementation errors have been corrected (v2.3.6, retrieved August 25, 2016). Second, we applied a cFWE threshold of P < 0.05 (calculated from an initial cluster-forming threshold of uncorrected P < 0.001) in lieu of the previously used voxel-wise FDR threshold. Third, we took the opportunity to update the dataset by searching for relevant articles published since our first analysis. We searched PubMed for articles published between July 1, 2013 and August 19, 2016 using the same search terms reported in Belyk et al. (2015). By applying the same inclusion criteria as in the original article, we added one new study to the re-analysis of positive associations of state stuttering (Toyomura et al., 2015). Only a small number of the most robust effects from the original analysis retained significance (Fig. 1 and Table 1). Trait stuttering was associated with increased activity in the orofacial premotor cortex and Rolandic operculum, and with decreased activity in the left orofacial pre/primary motor cortex. State stuttering was associated with increased activity in the right orofacial primary motor cortex, and was not associated with decreased activity in any brain area. We have reported an update to “Stuttering as a trait or a state: An ALE meta-analysis of neuroimaging studies” (Belyk et al., 2015) in light of the discovery of implementation errors in GingerALE software that may have led to overly liberal statistical thresholds in our analyses. In the updated analysis, only the most robust findings from the original meta-analysis retained significance. Importantly, the re-analysis is consistent with the interpretation of the data discussed in the original article and further suggests that the most robust neural correlates of persistent developmental stuttering are found within the motor areas that control the orofacial muscles. We reiterate the view of Eickhoff et al. (2017) that the implementation errors in previous versions of the GingerALE software do not invalidate the results of earlier meta-analyses that have used this software. Rather, earlier analyses are valid, but are more liberal than intended by the researchers. We therefore encourage readers to treat the original and updated meta-analyses as a complementary pair, with the more liberal analysis emphasizing statistical power at the risk false positives, and the more conservative analysis reducing the risk of false positives at the cost of statistical power. Although it is possible that the clusters that were not replicated in the re-analysis were false positives, this is not necessarily the case, since the more conservative analysis may have failed to detect some true effects. Eickhoff et al. (2016) reported the influence of both sample size and effect size (estimated as the proportion of experiments that contribute to each cluster) on statistical power. From their simulations, we estimate that the clusters that retained significance in the updated analysis had statistical power ranging from approximately 0.55–0.80 (i.e., from proportion “effect sizes” of 0.38–0.44 with 9-11 total experiments). The clusters that were significant in the original analysis, but that did not retain significance in the updated analysis, had statistical power that ranged widely, from approximately 0.15–0.85 (i.e., from proportion “effect sizes” of 0.13–0.55). The upper limit of this range reflects one cluster (the supplementary motor area) that was reported in a large proportion of studies, but that did not reach significance in the re-analysis. Future meta-analyses may be better able to detect these effects as more published data become available.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.009
metaresearch head score (Gemma)0.083
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Other · Consensus signal: none
Teacher disagreement score0.028
Threshold uncertainty score0.093

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0090.083
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0030.007
Bibliometrics0.0030.003
Science and technology studies0.0010.001
Scholarly communication0.0030.002
Open science0.0020.003
Research integrity0.0020.004
Insufficient payload (model declined to judge)0.0280.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.095
GPT teacher head0.338
Teacher spread0.243 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations40
Published2017
Admission routes1
Has abstractyes

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