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The role of miRNA-145 in esophageal adenocarcinoma.

2013· article· en· W2589606547 on OpenAlexaff
Mathieu Derouet, Michael A. Ko, Thomas K. Waddell, Geoffrey Liu, Gail Darling

Bibliographic record

VenueJournal of Clinical Oncology · 2013
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer-related molecular mechanisms research
Canadian institutionsPrincess Margaret Cancer CentreUniversity of TorontoSt Joseph's Health CentreUniversity Health Network
Fundersnot available
KeywordsmicroRNAApoptosisCancer researchMedicineCell growthAdenocarcinomaCell cultureDownregulation and upregulationCellCancerBiologyInternal medicineGeneGenetics

Abstract

fetched live from OpenAlex

46 Background: Carcinoma of the esophagus has become one of the fastest growing solid tumors in the world over the past 20 years and the 6th most common cause of death in the world. We previously conducted a study to profile the expression of miRNAs in esophageal adenocarcinoma (EAC) pre and post induction therapy. Out of the miRNAs discovered, miR-145, a known tumor suppressor miRNA, was upregulated 8-fold upon induction therapy however its expression was associated with shorter disease-free survival. This unexpected result was explored. Methods: In order to study the role of miR-145 in EAC, miRNA-145 was overexpressed in the EAC cell line OE33 (OE33 miR145). After validation of the expression of miR-145, several hallmarks of cancer such as cell proliferation, resistance to apoptosis and cell adhesion were analyzed. Results: There was no difference in cell proliferation and resistance to radiation between OE33 miR145 and OE33 control. However, there was a significant difference in cell adhesion. OE33 miR145 cells reattach faster than the OE33 control (72.3% cells reattached against 40.5% cells reattached after 3h, n=3, p<0.05). Furthermore, OE33 miR145 cells are able to recover better than OE33 control cells after 72 hours culture in suspension (126.5 colonies against 63.5 colonies after 5 days of culture, n=2, p<0.05). Conclusions: While there was no difference between the two OE33 populations in an attached state, clear differences appeared when cells were in a detached state. Although more work is required to confirm this effect, expression of miR-145 could help EAC cells in circulation by protecting them against apoptosis and helping them to reattach faster which could in turn facilitate distant metastasis.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.035
GPT teacher head0.405
Teacher spread0.370 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2013
Admission routes1
Has abstractyes

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