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Record W2589796306

Polyphosphate is a novel modulator of coagulation and inflammation and is a therapeutic target

2015· article· en· W2589796306 on OpenAlexaboutno aff
Richard J. Travers

Bibliographic record

VenueIllinois Digital Environment for Access to Learning and Scholarship (University of Illinois at Urbana-Champaign) · 2015
Typearticle
Languageen
FieldMedicine
TopicCoagulation, Bradykinin, Polyphosphates, and Angioedema
Canadian institutionsnot available
FundersNational Heart, Lung, and Blood InstituteNational Institutes of HealthAmerican Heart Association
KeywordsInflammationCoagulationPolyphosphateMedicineChemistryImmunologyInternal medicineBiochemistry
DOInot available

Abstract

fetched live from OpenAlex

While the basic outline of the enzymes and reactions that make up the traditional blood coagulation cascade has been understood for many years, appreciation of the complexity of these interactions has greatly increased in recent times. This has resulted in unofficial “revisions” of the coagulation cascade to include new amplification pathways and interactions between the standard coagulation cascade enzymes as well as novel and extensive connections between the immune system and the coagulation cascade. One exciting new area of research in hemostasis and thrombosis focuses on how inorganic polyphosphate (polyP) can mediate many of these novel amplification steps and many of the connections between coagulation and inflammation. Additionally, the multiple procoagulant and proinflammatory roles for polyP discovered in both mice and humans suggest that it may be an attractive therapeutic target for disorders of coagulation and inflammation. \n \nThe discovery that polyP is stored in platelet dense granules and is secreted during platelet activation has resulted in a recent burst of interest in the role of this ancient molecule in human biology; however, many standard biochemical techniques are not amenable to working with an inorganic polymer like polyP. To increase our ability to visualize polyP accumulation under both physiological and pathological conditions such as inflammation or thrombosis, I first developed a method for visualizing polyP based upon using a recombinant polyP binding protein as a modified “primary antibody” to specifically label polyP using immunofluorescent staining in cells and tissues. These techniques continue to provide us with more information about the role of polyP in normal human physiology and under pathological conditions like inflammation and thrombosis. \n \nIn order to determine if we could target polyP-mediated pathology as an effective method of treatment for inflammation and thrombosis, I have also developed a method of testing polyP inhibitors from high-throughput in vitro screening all the way to in vivo mouse models. First generation polyP inhibitors based on polycationic substances such as polyethylenimine, polyamidoamine (PAMAM) dendrimers and polymyxin B, while attenuating thrombosis, all had significant toxicity in vivo, likely due to the presence of multiple primary amines responsible for their polyP binding ability. In collaboration with the Kizhakkedathu lab at the University of British Columbia in Vancouver, Canada, I next examined a novel class of non-toxic polycationic compounds, initially designed as Universal Heparin Reversal Agents (UHRAs). I first worked with them to help evaluate the UHRA compounds in clinically relevant mouse models showing that the UHRA compounds can effectively reverse the bleeding side effects associated with a wide variety of heparins currently in clinical use. Next, they worked with me to screen the entire UHRA library for potential polyP inhibitors that shared the non-toxic nature of the UHRA compounds developed to reverse heparin anticoagulation. Several UHRA compounds strongly inhibited polyP procoagulant activity in vitro and four were selected for further examination in mouse models of thrombosis and hemostasis. Compounds UHRA 9 and UHRA 10 significantly reduced arterial thrombosis in mice. In mouse tail bleeding tests, administration of UHRA 9 or UHRA 10 was associated with significantly less bleeding compared to therapeutically equivalent doses of heparin. Furthermore, in collaboration with the Esmon Laboratory at the Oklahoma Medical Research Foundation, I have begun to characterize the polyP binding abilities of a family of anti-polyP antibodies discovered in an autoimmune strain of mice. PolyP inhibitors like the UHRA compounds or anti-polyP antibodies offer a new platform for developing novel antithrombotic and anti-inflammatory agents that target anionic polymers like polyP with reduced toxicity and bleeding side effects compared to conventional anticoagulant therapeutics.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.005
Threshold uncertainty score0.018

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0050.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.039
GPT teacher head0.252
Teacher spread0.213 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2015
Admission routes1
Has abstractyes

Explore more

Same venueIllinois Digital Environment for Access to Learning and Scholarship (University of Illinois at Urbana-Champaign)→Same topicCoagulation, Bradykinin, Polyphosphates, and Angioedema→French-language works237,207→