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Record W2601183184 · doi:10.1086/691710

A Modest Proposal for Unifying Macroevolution and Ecosystem Ecology

2017· article· en· W2601183184 on OpenAlexaffabout
Matthew W. Pennell, Mary I. O’Connor

Bibliographic record

VenueThe American Naturalist · 2017
Typearticle
Languageen
FieldEarth and Planetary Sciences
TopicEvolution and Paleontology Studies
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsMacroevolutionEcologyBiodiversityEvolutionary ecologyBiologyGeographyPhylogenetic tree

Abstract

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Previous articleNext article FreeCountdown to 150A Modest Proposal for Unifying Macroevolution and Ecosystem EcologyMatthew W. Pennell and Mary I. O’ConnorMatthew W. PennellDepartment of Zoology and Biodiversity Research Centre, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada Search for more articles by this author and Mary I. O’ConnorDepartment of Zoology and Biodiversity Research Centre, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada Search for more articles by this author PDFPDF PLUSFull Text Add to favoritesDownload CitationTrack CitationsPermissionsReprints Share onFacebookTwitterLinked InRedditEmailQR Code SectionsMoreThe first American Naturalist appeared in March 1867. In a countdown to the 150th anniversary, the editors have solicited short commentaries on articles from the past that deserve a second look.Modern macroevolutionary thought is firmly rooted in the theories, models, and conventions of population biology. The most common mathematical models for describing long-term trait change, either along a phylogeny or paleontological time series, are formally the same as those that describe evolution within populations. And most of the hypotheses that we want to test with these and other models revolve around how species interactions—and competition, in particular—shape patterns of diversity across deep time; think adaptive radiations, coevolution, and diversity-dependent diversification. As such, macroevolution and phylogenetic biology have been rather seamlessly incorporated into community ecology (phylogenetic community ecology, or ecophylogenetics) and the emerging trait-based research program. There is a lot of exciting work happening now at the intersection of these fields; for example, there has been a recent burst of methods for more explicitly modeling character displacement in diversifying clades (e.g., Nuismer and Harmon, 2015, “Predicting Rates of Interspecific Interaction from Phylogenetic Trees,” Ecology Letters 18:17–27).However, the interplay between macroevolution and ecology has been very limited in scope. Macroevolutionary biologists have tended to synonymize ecology with community ecology, leaving the phylogenetics revolution isolated from whole fields of ecology. Chief among these is ecosystem ecology. Recently, researchers have started thinking about how the flow of energy and nutrients through ecological systems is related to the underlying population dynamics (e.g., Michel Loreau, 2010, From Populations to Ecosystems: Theoretical Foundations for a New Ecological Synthesis, Princeton University Press, Princeton, NJ), but we have hardly even begun to consider how these system properties have evolved over long time periods.Remarkably, the possibility of such a project was proposed nearly 40 years ago by Joe Felsenstein, one of the key players in the development of modern statistical macroevolution. In “Macroevolution in a Model Ecosystem,” published in The American Naturalist in 1978, Felsenstein invented a series of nested models to explore how ecosystem properties change as lineages evolve and diversify. In the first model, energy flows through a population of identical individuals; then two genotypes with different energetic efficiencies compete in this population according to a simple, two-allele population genetics model; then the distribution of energetic efficiencies across a large number of lineages evolves over time (this is what Felsenstein refers to as macroevolution); then the environment changes such that optimizing energy efficiency comes with a risk; then Felsenstein incorporates trophic structure, such that energy is not lost from the system but is consumed by higher levels; and finally, he adds a mechanistic form of predation (or something resembling it), so that populations at lower levels do not increase without bound. The end result is a toy version of an ecosystem, in which the dynamics of the system are not only changing but evolving due to natural selection. Most remarkable is that his model suggests the possibility that the total energy content of an ecosystem may be generally predicted by adaptive evolution of energetic efficiencies.While undoubtedly creative, the article has been more or less ignored since its publication; it has been cited only four times as of February 2017 (Web of Knowledge), with three of those coming from outside of biology in journals like Dialectical Anthropology. (Felsenstein’s 1985 work “Phylogenies and the Comparative Method” is, in contrast, the second-most-cited paper in this journal’s 150-year history.) However, perhaps this is understandable; the work’s prescience is not at all obvious. Indeed, its central conceit is that this is a rather silly thing to be writing about—something better suited to (very) late-night conversations at the pub than journal clubs. The paper opens with a discourse on exobiology (“Suppose that we suddenly discovered that life existed somewhere else in the universe…”) and ends with an extensive, numbered section titled “Limitations.” We suspect that Felsenstein was slightly embarrassed about being seen as taking this too seriously. And in a way, it is a bit silly: the ecosystems described by the models are barely recognizable as ecosystems, the evolutionary dynamics are like a caricature of beanbag genetics, and the models seem to defy empirical tests.However, the cartoonish simplicity of the model allows Felsenstein to offer his key insight, which is tacked onto the discussion almost as an afterthought—the evolution of energetic efficiency can be considered a gain of information. Felsenstein borrows from communication and systems theories to compute the information content per individual in his evolving ecosystem and suggests that one could calculate the total adaptive information content, though he concedes that this idea is “informal at best” (p. 189). This argument built on other attempts in ecology to integrate energy and information flow to understand constraints on how ecological systems grow and develop. In this context, information has a long history in ecological systems theory, most notably in the pioneering work of Ramon Margalef (e.g., 1958, “Information Theory in Ecology,” General Systems 3:36–71). Robert MacArthur, in whose memory Felsenstein’s paper was dedicated, also made use of information theory (1955, “Fluctuations of Animal Populations and a Measure of Community Stability,” Ecology 36:533–536) before abandoning this approach and creating most of community ecology as we now know it. And Van Valen proposed something akin to a law of conservation of fitness (1976, “Energy and Evolution,” Evolutionary Theory 1:179–229), whereby organisms in a community are participants in a zero-sum game: any information received by one population is taken from another. But Felsenstein pushed this idea further to integrate adaptive processes, showing that, in principle, the information content of an evolving system should be expected to be dynamic and potentially knowable. This idea was revolutionary at the time (it still is!) and anticipated some cutting-edge developments happening today.Recently, Frank (2012, “Natural Selection. V. How to Read the Fundamental Equations of Evolutionary Change in Terms of Information Theory,” Journal of Evolutionary Biology 25:2377–2396) demonstrated that the fundamental equations of evolutionary change, normally expressed in statistical quantities such as variances, can be rewritten in terms of change in information. (He seems to be unaware of Felsenstein’s contribution to the topic.) From this, it is apparent that evolution by natural selection is literally a transfer of information from the environment to the genetic code of the organisms adapting to it. Completely independently, ecological systems theorists have revitalized the use of information as a measure of growth and stability of ecological systems characterized by diversity—the very subjects of interest of mainstream ecology and evolutionary thinking (e.g., R. E. Ulanowicz, S. J. Goerner, B. Lietaer, and R. Gomez, 2009, “Quantifying Sustainability: Resilience, Efficiency and the Return of Information Theory,” Ecological Complexity 6:27–36). Thus, energy flux through a system can be explicitly related to changes in allele frequencies in its constituent populations, suggesting that these two currently disparate fields could potentially be unified.Such unification could open up the possibility of answering questions that we could never even ask before. A unified understanding of evolutionary change with the general properties of living systems as understood in terms of mass, energy, and information flows could help sharpen our focus on problems of both basic and applied importance. For example, a major topic in contemporary ecology is the relationship between biodiversity and productivity (i.e., ecosystem function)—How has this relationship changed as clades diversified over macroevolutionary time? And how have interactions between flow of energy and information in systems constrained macroevolution? Felsenstein stated that his contribution was to explore “laws governing rates of change in macroevolution” (p. 177), in contrast to a second type of general property of living systems, the universal constants or constraints, valid throughout the evolutionary process. These two types of general properties might be considered goals of science, and the integration of energy flow, information flow (adaptation and evolution), and the distribution of mass over time in ecosystems might achieve both. We should renew our efforts to identify these general properties.In The American NaturalistFelsenstein, J. 1978. Macroevolution in a model ecosystem. American Naturalist 112:177–195.First citation in articleLinkGoogle Scholar———. 1985. Phylogenies and the comparative method. American Naturalist 125:1–15.First citation in articleLinkGoogle Scholar Previous articleNext article DetailsFiguresReferencesCited by The American Naturalist Volume 189, Number 6June 2017 Published for The American Society of Naturalists Article DOIhttps://doi.org/10.1086/691710 HistoryPublished online March 31, 2017 © 2017 by The University of Chicago. All rights reserved.PDF download Crossref reports the following articles citing this article:Denon Start Predator macroevolution drives trophic cascades and ecosystem functioning, Proceedings of the Royal Society B: Biological Sciences 285, no.18831883 (Jul 2018).https://doi.org/10.1098/rspb.2018.0384Blake Matthews, Rebecca J. Best, Philine G.D. Feulner, Anita Narwani, Romana Limberger, Ted Morgan Evolution as an ecosystem process: insights from genomics, Genome 61, no.44 (Apr 2018): 298–309.https://doi.org/10.1139/gen-2017-0044

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesScience and technology studies
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.294
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0010.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.021
GPT teacher head0.276
Teacher spread0.254 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations4
Published2017
Admission routes2
Has abstractyes

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