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Record W2604568423 · doi:10.1002/jrsm.1287

Machine learning for identifying Randomized Controlled Trials: An evaluation and practitioner's guide

2018· article· en· W2604568423 on OpenAlexfundno aff
Iain Marshall, Anna H Noel-Storr, Joël Kuiper, James Thomas, Byron Wallace

Bibliographic record

VenueResearch Synthesis Methods · 2018
Typearticle
Languageen
FieldComputer Science
TopicMachine Learning in Healthcare
Canadian institutionsnot available
FundersU.S. National Library of MedicineAgency for Healthcare Research and QualityNational Institutes of HealthNational Cancer InstituteMedical Research CouncilMcMaster University
KeywordsComputer scienceMachine learningArtificial intelligenceRandomized controlled trialWorkflowConvolutional neural networkSupport vector machineSystematic reviewSensitivity (control systems)Data miningMEDLINEMedicineDatabase

Abstract

fetched live from OpenAlex

Machine learning (ML) algorithms have proven highly accurate for identifying Randomized Controlled Trials (RCTs) but are not used much in practice, in part because the best way to make use of the technology in a typical workflow is unclear. In this work, we evaluate ML models for RCT classification (support vector machines, convolutional neural networks, and ensemble approaches). We trained and optimized support vector machine and convolutional neural network models on the titles and abstracts of the Cochrane Crowd RCT set. We evaluated the models on an external dataset (Clinical Hedges), allowing direct comparison with traditional database search filters. We estimated area under receiver operating characteristics (AUROC) using the Clinical Hedges dataset. We demonstrate that ML approaches better discriminate between RCTs and non-RCTs than widely used traditional database search filters at all sensitivity levels; our best-performing model also achieved the best results to date for ML in this task (AUROC 0.987, 95% CI, 0.984-0.989). We provide practical guidance on the role of ML in (1) systematic reviews (high-sensitivity strategies) and (2) rapid reviews and clinical question answering (high-precision strategies) together with recommended probability cutoffs for each use case. Finally, we provide open-source software to enable these approaches to be used in practice.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.210
metaresearch head score (Gemma)0.559
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesMetaresearch
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.790
Threshold uncertainty score0.974

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.2100.559
Meta-epidemiology (narrow)0.0040.004
Meta-epidemiology (broad)0.0070.006
Bibliometrics0.0170.012
Science and technology studies0.0010.003
Scholarly communication0.0060.006
Open science0.0070.004
Research integrity0.0070.012
Insufficient payload (model declined to judge)0.0190.012

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.426
GPT teacher head0.623
Teacher spread0.196 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; the direct Gemma label and the distilled Codex classifier agree on what is shown here.

Study designSimulation or modeling
DomainMethods
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations449
Published2018
Admission routes1
Has abstractyes

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