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Record W2734515116

Bio)Crystallography at the turn of the Millennium

2001· article· en· W2734515116 on OpenAlexfundno aff
B. Kojić-Prodić, Jan Kroon

Bibliographic record

VenueInstitutional Repository of the Ruđer Bošković Institute (Ruđer Bošković Institute) · 2001
Typearticle
Languageen
FieldMaterials Science
TopicEnzyme Structure and Function
Canadian institutionsnot available
FundersSveučilište u ZagrebuYork UniversityYale University
KeywordsChemistryNanotechnologyCrystallographyPhysicsMaterials science
DOInot available

Abstract

fetched live from OpenAlex

This review is focused on the present status of X-ray crystallography and its impact on chemistry and the life sciences. The discovery of the DNA double-helix structure from a fibre X-ray diagram in 1953 marked the last century, whereas the human genome project (to be completed in the year 2003, the 50-th anniversary of Crick's and Watson's discovery) and the proteomics will open the new millennium. The crystal structure determinations of very complex biological assemblies such as viruses and ribosomes illustrate the power of contemporary X-ray structure analysis. The historical background is given, which touches on some of the important steps from the early days of the discovery of X-rays. The advanced and new methods and technologies of the modern era, such as third-generation synchrotrons, sensitive area detectors, up-to date computer technologies with computer graphics, cryo-techniques, micro-crystallization methods, and genetic engineering, all contributing to the development of X-ray crystallography, are evaluated in separate paragraphs. Some examples that illustrate the power of the methods are selected from the contemporary research in the field. Systematics of known crystal structures of small molecules and macromolecules and their assemblies collected over the years has developed our perception of the nature of the chemical bond, and the interactions between atoms and molecules, which determine the chemical, physical, and biological properties. This fundamental knowledge enables structure and property predictions, useful in many branches of science and technology. A method, starting with the structure of table salt, has developed into a very fine tool for looking into complex living systems. Time-resolved crystallography and cryo-electron microscopy are capable of recording biological events and they inform us about the dynamics of enzymes and living cell activities. In combination with bioinformatics, very fast events, recorded experimentally or proposed theoretically, can be interpreted by the methods of molecular dynamics simulations. The vivid interplay of ideas coming from different scientific fields and technologies has led to capital discoveries, which have opened roads to new disciplines, such as molecular genetics and molecular medicine. These two branches, in particular, enriched by findings on DNA and protein structures, can provide efficient therapies for many diseases, health prevention, and reduce ageing problems. Our views on the nature of the chemical bond have been revised and our horizons will be extended and clearer in the years to come. Applying an ethical approach in science, humanity will learn how to improve the quality of life all over the world.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Science and technology studies
Consensus categoriesScience and technology studies
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.672
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0000.002
Science and technology studies0.0040.009
Scholarly communication0.0000.002
Open science0.0030.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.208
Teacher spread0.198 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; both teacher heads agree on what is shown here.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2001
Admission routes1
Has abstractyes

Explore more

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