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Caffeine intake and the plasma proteome

2013· article· en· W2735241918 on OpenAlexafffundabout
Ouxi Tian, Andrea R. Josse, Ahmed El‐Sohemy

Bibliographic record

VenueThe FASEB Journal · 2013
Typearticle
Languageen
FieldMedicine
TopicCoffee research and impacts
Canadian institutionsUniversity of Toronto
FundersCanadian Institutes of Health Research
KeywordsCaffeineCYP1A2GenotypeSingle-nucleotide polymorphismProteomeGenotypingParaxanthinePolymorphism (computer science)Blood proteinsChemistryInternal medicineEndocrinologyMedicineBiologyMetabolismBiochemistryGeneCytochrome P450

Abstract

fetched live from OpenAlex

Caffeine intake has been associated with both an increased and decreased risk of various health conditions. However, the physiological pathways affected remain unclear. CYP1A2 is the major enzyme that metabolizes caffeine and a single nucleotide polymorphism ( rs762551 ) affects the rate of caffeine metabolism. The objective of this study was to determine whether caffeine intake is associated with proteins in the plasma proteome, and whether CYP1A2 genotype modifies any of the associations observed. Subjects (n=1095) aged 20–29 years completed a 196‐ item semi‐quantitative food frequency questionnaire and provided a fasting blood sample from which DNA and plasma were obtained for genotyping and proteomic analysis with 54 plasma proteins. Subjects were categorized into three groups according to habitual caffeine intake (<100mg/d, 100–200mg/d, and >;200mg/d) and later stratified by CYP1A2 genotype. Among individuals with A/C or C/C genotypes (slow metabolizers), plasma concentration of complement component 3 (p=0.03) and gelsolin isoform 1 (p=0.005), were significantly lower in the highest category of caffeine intake. No differences in protein concentration were observed for A/A individuals (fast metabolizers). These results suggest certain plasma proteins are affected by caffeine intake, but only among slow metabolizers. Grant Funding Source : Canadian Institutes of Health Research

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.023
GPT teacher head0.276
Teacher spread0.253 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2013
Admission routes3
Has abstractyes

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