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Record W2739143428 · doi:10.1093/biosci/bix076

Tree-Killing Fungus Continues to Spread on Hawaii's Biggest Island

2017· article· en· W2739143428 on OpenAlexaff
Marcia Stone

Bibliographic record

VenueBioScience · 2017
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant Pathogens and Fungal Diseases
Canadian institutionsWorld Federation of Science Journalists
Fundersnot available
KeywordsFungusTree (set theory)GeographyEcologyBiologyBotanyMathematics

Abstract

fetched live from OpenAlex

At least two previously unknown species of the plant pathogen Ceratocystis fimbriata are killing large numbers of Hawaii's native ‘ohi’a (Metrosideros polymorpha Gaudich), the state's most widespread and ecologically important trees. Despite efforts by scientists to stop their spread, so far, the fungi appear to be winning. But scientists working together with land managers have learned enough about this tenacious pathogen to begin effectively fighting back. Scientists suspected, but have not been able to conclusively demonstrate, that species of Ceratocystis that eventually infected ‘ohi’a sneaked into Hawaii on imported plants more than 20 years ago. However, the fungi's effects went unnoticed until 2010, when a few isolated cases of dead and dying trees were reported to foresters J. B. Friday, at the University of Hawaii's College of Tropical Agriculture and Human Resources, and Flint Hughes, at the US Department of Agriculture's Forest Service in Hilo. Reports of diseased trees were escalating by 2012, and in 2014, the damage that C. fimbriata could inflict became obvious on Hawaii, the largest island in the Hawaiian archipelago. That year, Lisa Keith and her team at the US Department of Agriculture's Agricultural Research Service (ARS) in Hilo, along with Friday, Hughes, and colleagues, identified a new tree-­killing C. fimbriata. The scientists warned then that the disease it causes, which was named rapid ‘ohi’a death (or ROD) because of the short time it takes for trees to die once their crowns turn yellow, would prove “catastrophic to the diversity, structure, and function of Hawaii's remaining native forests and the services they provide.” A second C. fimbriata species was discovered in dead and dying ‘ohi’a later that year. “As of 2016, aerial surveys showed more than 50,000 acres containing hundreds of thousands of otherwise healthy trees on Hawaii Island had been killed, most likely by the fungus,” says Keith. She notes, though, that it is difficult to arrive at a true estimate because trees killed by C. fimbriata look the same as those that die from other ailments or drought. Furthermore, the fungi can persist in a tree for more than a year before there are visible symptoms of disease. Once the first symptoms emerge, the ‘ohi’a die quickly. An infected tree can be strangled to death in weeks as the fungus colonizes its sapwood, blocking water flow from the roots. “Mortality of ‘ohi’a at this scale is of great concern as the understory in these forests is often occupied by invasive species capable of severely limiting ‘ohi’a regeneration,” wrote Leif Mortenson and colleagues in the October 2016 issue of Forest Ecology and Management. Originally caught infecting sweet potato, C. fimbriata are members of a diverse group of host-specialized fungi that cause wilt, cankers, and rot diseases in many economically important plants. Scientists consider it likely that the group contains many undescribed “hidden” members. C. fimbriata distinct from the ‘ohi’a-killing variety have been found on Hawaii Island infecting kalo (also known as taro) and Syngonium (a common ornamental plant), but these species have never infected the ‘ohi’a. It has now been firmly established that the Ceratocystis species killing ‘ohi’a are true invaders. DNA sequencing places each C. fimbriata strain into one of three host-­specific broad geographic groups: the North American, Latin American, or Asian clades. One of the two new ‘ohi’a-infecting Ceratocystis pathogens is closely related to those in the Latin American clade and the other to the Asian group. ‘Ohi’a are critical to the ecology of Hawaii, providing habitat for rare and endangered native insects and birds. The trees’ extensive root system guides rainwater underground; therefore, the loss threatens Hawaii's fresh water supply. So far, the ‘ohi’a-killing C. fimbriata have been contained on Hawaii Island by strict export regulations. In 2014, Hawaii's Department of Agriculture quarantined all ‘ohi’a products—wood, leaves, shoots, and seeds. Because the spores of many Ceratocystis species remain viable in soil for extended periods of time, it, too, is quarantined. The restrictions became permanent in 2016. Unfortunately, quarantine alone is not enough. “The problem is quite simply the ease with which spores are carried on the worldwide transport of virtually anything,” says Anthony Trewavas, from the Institute of Molecular Plant Science at the University of Edinburgh. Meanwhile, scientists are screening ‘ohi’a for genetic sources of host resistance, evaluating biofungicides and natural products as alternative strategies to control C. fimbriata, and investigating ways to sanitize sawdust and sterilize logs and poles. Importantly, a new diagnostic assay has already been developed by Keith and colleagues that decreases the time it takes to detect C. fimbriata from 2 to 4 weeks to less than 24 hours.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.043
Threshold uncertainty score0.085

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.266
Teacher spread0.249 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2017
Admission routes1
Has abstractno

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