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Microsatellite-polymorphism and association with production traits in Japanese quails

2016· article· en· W2739360251 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

aboutThe title or abstract carries a Canadian signal from the geographic lexicon.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueIndian Journal of Poultry Science · 2016
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicAnimal Nutrition and Physiology
Canadian institutionsnot available
Fundersnot available
KeywordsMicrosatelliteVeterinary medicineBiologyPolymorphism (computer science)GeneticsBiotechnologyMedicineGenotypeAlleleGene

Abstract

fetched live from OpenAlex

The genetic polymorphism in 40 unrelated Japanese quails belonging to two strains (Black and White) was investigated using five microsatellite loci (GUJ0008, GUJ0034, GUJ0041, GUJ0056 and GUJ0070), which was then associated with body weight at 5 weeks of age trait. The genomic DNA was isolated from the peripheral blood samples collected aseptically from the birds. The PCR products for different microsatellite loci were resolved on 3.5% Metaphor agarose against 100 bp plus DNA ladder (Fermentas, Canada) and manually scored for the band patterns. The Chi-square test indicated that the loci might be under the influence of forces like selection, migration, mutation, etc. as all locus-strain combination deviated from Hardy-Weinberg equilibrium. The number of alleles in the different microsatellite loci studied varied from 6 to10, indicating a high degree of polymorphism. The PIC value was the highest for locus GUJ0070 for white plumage (0.698) and locus GUJ0034 for black plumage (0.768). Specific alleles were found to be private to either of the strain for the loci studied except for GUJ0070 locus. The GUJ0034 locus had a significant effect on the body weight at 5 weeks of age (BWT5) (p<0.05). The genotypic value of BWT5 was found to be the highest in genotype “FD” and the lowest in genotype “BA”. The microsatellite may be used in a separate independent sample of Japanese quails for selecting the birds at 5 weeks of age for higher body weight, before attaining sexual maturity.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.869
Threshold uncertainty score0.071

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.208
Teacher spread0.198 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it