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Record W2757031853 · doi:10.1016/j.simyco.2017.09.001

<i>Cephalotrichum</i> and related synnematous fungi with notes on species from the built environment

2017· article· en· W2757031853 on OpenAlex
J.H.C. Woudenberg, Marcelo Sandoval‐Denis, Jos Houbraken, Keith A. Seifert, Robert A. Samson

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueStudies in Mycology · 2017
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant Pathogens and Fungal Diseases
Canadian institutionsAgriculture and Agri-Food Canada
Fundersnot available
KeywordsHerbariumBiologySynonym (taxonomy)Taxonomy (biology)BotanyPhylogenetic treeInternal transcribed spacerZoologyGenusGeneticsGene

Abstract

fetched live from OpenAlex

A recent taxonomic revision of Microascaceae with an emphasis on synnematous fungi enabled re-identification of previously isolated indoor strains of Cephalotrichum . All available Cephalotrichum strains from the culture collection of the Westerdijk Institute were studied, 20 originating from the built environment. Phylogenetic relationships were inferred from DNA sequence data from the internal transcribed spacer 1 and 2 and intervening 5.8S nrDNA (ITS), and parts of β-tubulin ( tub2 ) and translation elongation factor 1-α ( tef1 ) genes. Additionally, herbarium material of 14 Cephalotrichum species described from soil in China was studied, and the taxonomy of C. album , not considered in recent revisions, was reevaluated. Sixteen phylogenetic species in Cephalotrichum are distinguished, five described as new species: C. domesticum , C. lignatile , C. telluricum , C. tenuissimum and C. transvaalense . Five Cephalotrichum species occur in the built environment: C. domesticum , C. gorgonifer (formerly known as Trichurus spiralis ), C. microsporum , C. purpureofuscum , and C. verrucisporum . Based on the number of isolates, C. gorgonifer (nine strains) is the most common indoor species. The study of the Chinese herbarium material resulted in the acceptance of three additional Cephalotrichum species: C. casteneum , C. ellipsoideum , and C. spirale . Four species are considered nomena dubia ( C. cylindrosporum , C. macrosporum , C. ovoideum , and C. robustum ), five are placed in synonymy with other Cephalotrichum species ( C. acutisporum , C. inflatum , C. longicollum , C. oblongum , C. terricola ) and one species, C. verrucipes , is probably a synonym of Penicillium clavigerum . Cephalotrichum columnare , former Doratomyces columnaris , is transferred to Kernia . Cephalotrichum album , formerly known as Doratomyces putredinis , is transferred to Acaulium and redescribed.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.446
Threshold uncertainty score0.341

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.024
GPT teacher head0.260
Teacher spread0.237 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it