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PRECEPT: an evidence assessment framework for infectious disease epidemiology, prevention and control

2017· article· en· W2764059735 on OpenAlexaff
Thomas Harder, Anja Takla, Tim Eckmanns, Simon Ellis, Frode Forland, Roberta James, Joerg J Meerpohl, Antony Morgan, Eva Rehfuess, Holger J. Schünemann, Teun Zuiderent‐Jerak, Helena de Carvalho Gomes, Ole Wichmann

Bibliographic record

VenueEurosurveillance · 2017
Typearticle
Languageen
FieldDecision Sciences
TopicMeta-analysis and systematic reviews
Canadian institutionsImpactHealth Sciences CentreMcMaster University Medical Centre
FundersCenters for Disease Control and PreventionInstitut de Veille SanitaireEuropean Centre for Disease Prevention and ControlWorld Health Organization
KeywordsPreceptGrading (engineering)Evidence-based medicinePublic healthCritical appraisalSystematic reviewEvidence-based practiceEmpirical evidenceManagement scienceScientific evidenceMedicineEpidemiologyComputer scienceMEDLINERisk analysis (engineering)Alternative medicinePathologyMathematicsPolitical scienceEngineeringStatistics

Abstract

fetched live from OpenAlex

Decisions in public health should be based on the best available evidence, reviewed and appraised using a rigorous and transparent methodology. The Project on a Framework for Rating Evidence in Public Health (PRECEPT) defined a methodology for evaluating and grading evidence in infectious disease epidemiology, prevention and control that takes different domains and question types into consideration. The methodology rates evidence in four domains: disease burden, risk factors, diagnostics and intervention. The framework guiding it has four steps going from overarching questions to an evidence statement. In step 1, approaches for identifying relevant key areas and developing specific questions to guide systematic evidence searches are described. In step 2, methodological guidance for conducting systematic reviews is provided; 15 study quality appraisal tools are proposed and an algorithm is given for matching a given study design with a tool. In step 3, a standardised evidence-grading scheme using the Grading of Recommendations Assessment, Development and Evaluation Working Group (GRADE) methodology is provided, whereby findings are documented in evidence profiles. Step 4 consists of preparing a narrative evidence summary. Users of this framework should be able to evaluate and grade scientific evidence from the four domains in a transparent and reproducible way.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.347
metaresearch head score (Gemma)0.369
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesMetaresearch
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.653
Threshold uncertainty score0.806

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.3470.369
Meta-epidemiology (narrow)0.0060.004
Meta-epidemiology (broad)0.0110.021
Bibliometrics0.0390.023
Science and technology studies0.0050.009
Scholarly communication0.0220.014
Open science0.0130.018
Research integrity0.0130.016
Insufficient payload (model declined to judge)0.0100.006

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.729
GPT teacher head0.608
Teacher spread0.121 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; the direct Gemma label and the distilled Codex classifier agree on what is shown here.

Study designTheoretical or conceptual
DomainMethods
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations29
Published2017
Admission routes1
Has abstractyes

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