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Record W2766113466 · doi:10.1093/gigascience/gix101

LAGOS-NE: a multi-scaled geospatial and temporal database of lake ecological context and water quality for thousands of US lakes

2017· article· en· W2766113466 on OpenAlexaff
Patricia A. Soranno, Linda C. Bacon, Michael Beauchene, Karen E Bednar, Edward G Bissell, Claire Boudreau, Marvin G. Boyer, Mary T. Bremigan, Stephen R. Carpenter, J. Carr, Kendra Spence Cheruvelil, Samuel T. Christel, Matt Claucherty, Sarah M. Collins, Joseph D. Conroy, John Downing, Jed Dukett, C. Emi Fergus, Christopher T. Filstrup, Clara Funk, María J. Gonzàlez, Linda T. Green, Corinna Gries, John D. Halfman, Stephen K. Hamilton, Paul C. Hanson, Emily Norton Henry, Elizabeth Herron, Celeste Hockings, James R. Jackson, Kari Jacobson-Hedin, Lorraine L. Janus, William W. Jones, John R. Jones, Caroline M Keson, Katelyn King, Scott A. Kishbaugh, Jean‐François Lapierre, Barbara Lathrop, Jo A. Latimore, Yuehlin Lee, Noah R. Lottig, Jason Lynch, Leslie J. Matthews, William H. McDowell, Karen Moore, Brian P. Neff, Sarah J. Nelson, Samantha K. Oliver, Michael L. Pace, Donald C. Pierson, Autumn Poisson, Amina I. Pollard, David M. Post, Paul O Reyes, Donald O. Rosenberry, Karen M. Roy, Lars G. Rudstam, Orlando Sarnelle, Nancy J Schuldt, Caren E. Scott, Nicholas K. Skaff, Nicole J. Smith, Nick R Spinelli, Jemma Stachelek, Emily H. Stanley, John L. Stoddard, Scott B Stopyak, Craig A. Stow, Jason Tallant, Pang‐Ning Tan, Anthony P. Thorpe, Michael J. Vanni, Tyler Wagner, Gretchen Watkins, Kathleen C. Weathers, Katherine E. Webster, Jeffrey D. White, Marcy K Wilmes, Shuai Yuan

Bibliographic record

VenueGigaScience · 2017
Typearticle
Languageen
FieldEnvironmental Science
TopicFish Ecology and Management Studies
Canadian institutionsUniversité de Montréal
Fundersnot available
KeywordsWater qualityGeospatial analysisContext (archaeology)DatabaseEnvironmental scienceLake ecosystemEcologyHydrology (agriculture)EcosystemGeographyRemote sensingComputer scienceGeologyBiology

Abstract

fetched live from OpenAlex

Understanding the factors that affect water quality and the ecological services provided by freshwater ecosystems is an urgent global environmental issue. Predicting how water quality will respond to global changes not only requires water quality data, but also information about the ecological context of individual water bodies across broad spatial extents. Because lake water quality is usually sampled in limited geographic regions, often for limited time periods, assessing the environmental controls of water quality requires compilation of many data sets across broad regions and across time into an integrated database. LAGOS-NE accomplishes this goal for lakes in the northeastern-most 17 US states.LAGOS-NE contains data for 51 101 lakes and reservoirs larger than 4 ha in 17 lake-rich US states. The database includes 3 data modules for: lake location and physical characteristics for all lakes; ecological context (i.e., the land use, geologic, climatic, and hydrologic setting of lakes) for all lakes; and in situ measurements of lake water quality for a subset of the lakes from the past 3 decades for approximately 2600-12 000 lakes depending on the variable. The database contains approximately 150 000 measures of total phosphorus, 200 000 measures of chlorophyll, and 900 000 measures of Secchi depth. The water quality data were compiled from 87 lake water quality data sets from federal, state, tribal, and non-profit agencies, university researchers, and citizen scientists. This database is one of the largest and most comprehensive databases of its type because it includes both in situ measurements and ecological context data. Because ecological context can be used to study a variety of other questions about lakes, streams, and wetlands, this database can also be used as the foundation for other studies of freshwaters at broad spatial and ecological scales.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.005
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Dataset · Consensus signal: Dataset
Teacher disagreement score0.086
Threshold uncertainty score0.170

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.005
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0070.013
Science and technology studies0.0010.000
Scholarly communication0.0020.002
Open science0.0010.002
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0130.005

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.036
GPT teacher head0.298
Teacher spread0.262 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreDataset

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations151
Published2017
Admission routes1
Has abstractyes

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