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Record W2766464964 · doi:10.1101/196139

Glioma Through the Looking GLASS: the Glioma Longitudinal Analysis consortium, molecular evolution of diffuse gliomas

2017· preprint· en· W2766464964 on OpenAlexaff
Kenneth Aldape, Samirkumar B. Amin, David M. Ashley, Jill S. Barnholtz‐Sloan, Amanda Bates, Rameen Beroukhim, Christoph Bock, Daniel J. Brat, Elizabeth B. Claus, J Costello, John de Groot, Gaetano Finocchiaro, Pim J. French, Hui Gan, Brent Griffith, Christel Herold‐Mende, Craig Horbinski, Antonio Iavarone, Steven N. Kalkanis, Konstantina Karabatsou, Hoon Kim, Mathilde C.M. Kouwenhoven, Kerrie L. McDonald, Hrvoje Miletić, Do‐Hyun Nam, Ho‐Keung Ng, Simone P. Niclou, Houtan Noushmehr, D. Ryan Ormond, Laila Poisson, Guido Reifenberger, Federico Roncaroli, K. Jason, Peter AE Sillevis Smitt, Marion Smits, Camila Ferreira de Souza, Ghazaleh Tabatabai, Erwin G. Van Meir, Roel G.W. Verhaak, Colin Watts, Pieter Wesseling, Adelheid Wöehrer, WK Alfred Yung, Christine Jungk, Ann‐Christin Hau, Eric Van Dyck, Bart A. Westerman, Julia Yin, Olajide Abiola, Mustafa Khasraw, Erik P. Sulman, Andrea Muscat

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2017
Typepreprint
Languageen
FieldMedicine
TopicGlioma Diagnosis and Treatment
Canadian institutionsUniversity of Toronto
FundersMedical Research CouncilWinship Cancer InstituteNational Cancer InstituteNational Institutes of HealthKWF KankerbestrijdingElse Kröner-Fresenius-StiftungFundação de Amparo à Pesquisa do Estado de São PauloUniversity of SydneyNational Brain Tumor SocietyAustrian Science FundEuropean Commission
KeywordsGliomaEpigenomicsDiseasePhenotypeSomatic cellTranscriptomePopulationOncologyInternal medicineMedicineBiologyPathologyCancer researchGeneticsGeneDNA methylation

Abstract

fetched live from OpenAlex

Abstract Adult diffuse glioma are a diverse group of intracranial neoplasms associated with a disproportional large number of productive life years lost, thus imposing a highly emotional and significant financial burden on society. Patient death is the result of an aggressive course of disease following diagnosis. The Cancer Genome Atlas and similar projects have provided a comprehensive understanding of the somatic alterations and molecular subtypes of glioma at diagnosis. However, gliomas undergo significant molecular evolution during the malignant transformation. We review current knowledge on genomic, epigenomic and transcriptomic abnormalities before and after disease recurrence. We outline an effort to systemically catalogue the longitudinal changes in gliomas, the G lioma L ongitudinal A naly s i s Consortium. The GLASS initiative will provide essential insights into the evolution of glioma towards a lethal phenotype with the potential to reveal targetable vulnerabilities, and ultimately, improved outcomes for a patient population in need.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.005
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.038
Threshold uncertainty score0.076

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0050.005
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0020.002
Science and technology studies0.0010.000
Scholarly communication0.0010.001
Open science0.0010.002
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.258
Teacher spread0.240 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2017
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)→Same topicGlioma Diagnosis and Treatment→French-language works237,207→