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Record W2772039660 · doi:10.1007/s13225-017-0391-3

Fungal diversity notes 603–708: taxonomic and phylogenetic notes on genera and species

2017· article· en· W2772039660 on OpenAlexaff
Kevin D. Hyde, Chada Norphanphoun, Vanessa Pereira de Abreu, Anna Bazzicalupo, K. W. Thilini Chethana, Marco Clericuzio, Monika C. Dayarathne, Asha J. Dissanayake, Anusha H. Ekanayaka, Mao-Qiang He, Sinang Hongsanan, Jinbiao Huang, Subashini C. Jayasiri, Ruvishika S. Jayawardena, Anuruddha Karunarathna, Sirinapa Konta, Ivana Kušan, Hyun Lee, Junfu Li, Chuan-Gen Lin, Ning-Guo Liu, Yong‐Zhong Lu, Zong-Long Luo, Ishara S. Manawasinghe, Ausana Mapook, Rekhani H. Perera, Rungtiwa Phookamsak, Chayanard Phukhamsakda, Igor Siedlecki, Adriene Mayra Soares, Danushka S. Tennakoon, Qing Tian, Saowaluck Tibpromma, Dhanushka N. Wanasinghe, Yuan-Pin Xiao, Jing Yang, Xiang‐Yu Zeng, Faten A. Abdel-Aziz, Wenjing Li, Indunil C. Senanayake, Qiu-Ju Shang, Dinushani A. Daranagama, Nimali I. de Silva, Kasun M. Thambugala, Mohamed A. Abdel‐Wahab, Ali H. Bahkali, Mary L. Berbee, Saranyaphat Boonmee, D. Jayarama Bhat, Timur S. Bulgakov, Bart Buyck, Erio Camporesi, Rafael F. Castañeda-Ruíz, Putarak Chomnunti, Minkwan Doilom, Francesco Dovana, Tatiana Baptista Gibertoni, Margita Jadan, Rajesh Jeewon, E. B. Gareth Jones, Ji-Chuan Kang, Samantha C. Karunarathna, Young Woon Lim, Jian‐Kui Liu, Liu Zuo-yi, Helio Longoni Plautz, Saisamorn Lumyong, Sajeewa S. N. Maharachchikumbura, Neven Matočec, Eric H. C. McKenzie, Armin Mešić, Daniel R. Miller, Julia Pawłowska, Olinto Liparini Pereira, Itthayakorn Promputtha, Andrea I. Romero, Leif Ryvarden, Hong-Yan Su, Satinee Suetrong, Zdenko Tkalčec, Alfredo Vizzini, Ting‐Chi Wen, Komsit Wisitrassameewong, Marta Wrzosek, Jianchu Xu, Qi Zhao, Rui-Lin Zhao, Peter E. Mortimer

Bibliographic record

VenueFungal Diversity · 2017
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant Pathogens and Fungal Diseases
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsIncertae sedisDothideomycetesBiologyBotanyZoologyTaxonomy (biology)Ascomycota

Abstract

fetched live from OpenAlex

This is the sixth in a series of papers where we bring collaborating mycologists together to produce a set of notes of several taxa of fungi. In this study we introduce a new family Fuscostagonosporaceae in Dothideomycetes. We also introduce the new ascomycete genera Acericola , Castellaniomyces , Dictyosporina and Longitudinalis and new species Acericola italica , Alternariaster trigonosporus , Amarenomyces dactylidis , Angustimassarina coryli , Astrocystis bambusicola , Castellaniomyces rosae , Chaetothyrina artocarpi , Chlamydotubeufia krabiensis , Colletotrichum lauri , Collodiscula chiangraiensis , Curvularia palmicola , Cytospora mali - sylvestris , Dictyocheirospora cheirospora , Dictyosporina ferruginea , Dothiora coronillae , Dothiora spartii , Dyfrolomyces phetchaburiensis , Epicoccum cedri , Epicoccum pruni , Fasciatispora calami , Fuscostagonospora cytisi , Grandibotrys hyalinus , Hermatomyces nabanheensis , Hongkongmyces thailandica , Hysterium rhizophorae , Jahnula guttulaspora , Kirschsteiniothelia rostrata , Koorchalomella salmonispora , Longitudinalis nabanheensis , Lophium zalerioides , Magnibotryascoma mali , Meliola clerodendri - infortunati , Microthyrium chinense , Neodidymelliopsis moricola , Neophaeocryptopus spartii , Nigrograna thymi , Ophiocordyceps cossidarum , Ophiocordyceps issidarum , Ophiosimulans plantaginis , Otidea pruinosa , Otidea stipitata , Paucispora kunmingense , Phaeoisaria microspora , Pleurothecium floriforme , Poaceascoma halophila , Periconia aquatica , Periconia submersa , Phaeosphaeria acaciae , Phaeopoacea muriformis , Pseudopithomyces kunmingnensis , Ramgea ozimecii , Sardiniella celtidis , Seimatosporium italicum , Setoseptoria scirpi , Torula gaodangensis and Vamsapriya breviconidiophora . We also provide an amended account of Rhytidhysteron to include apothecial ascomata and a J+ hymenium. The type species of Ascotrichella hawksworthii ( Xylariales genera incertae sedis ), Biciliopsis leptogiicola ( Sordariomycetes genera incertae sedis ), Brooksia tropicalis ( Micropeltidaceae ), Bryochiton monascus ( Teratosphaeriaceae ), Bryomyces scapaniae ( Pseudoperisporiaceae ), Buelliella minimula ( Dothideomycetes genera incertae sedis ), Carinispora nypae ( Pseudoastrosphaeriellaceae ), Cocciscia hammeri ( Verrucariaceae ), Endoxylina astroidea ( Diatrypaceae ), Exserohilum turcicum ( Pleosporaceae ), Immotthia hypoxylon ( Roussoellaceae ), Licopolia franciscana ( Vizellaceae ), Murispora rubicunda ( Amniculicolaceae ) and Doratospora guianensis (synonymized under Rizalia guianensis , Trichosphaeriaceae ) were re-examined and descriptions, illustrations and discussion on their familial placement are given based on phylogeny and morphological data. New host records or new country reports are provided for Chlamydotubeufia huaikangplaensis , Colletotrichum fioriniae , Diaporthe subclavata , Diatrypella vulgaris , Immersidiscosia eucalypti , Leptoxyphium glochidion , Stemphylium vesicarium , Tetraploa yakushimensis and Xepicula leucotricha . Diaporthe baccae is synonymized under Diaporthe rhusicola. A reference specimen is provided for Periconia minutissima. Updated phylogenetic trees are provided for most families and genera. We introduce the new basidiomycete species Agaricus purpurlesquameus , Agaricus rufusfibrillosus , Lactifluus holophyllus , Lactifluus luteolamellatus , Lactifluus pseudohygrophoroides , Russula benwooii , Russula hypofragilis , Russula obscurozelleri , Russula parapallens , Russula phoenicea , Russula pseudopelargonia , Russula pseudotsugarum , Russula rhodocephala , Russula salishensis , Steccherinum amapaense , Tephrocybella constrictospora , Tyromyces amazonicus and Tyromyces angulatus and provide updated trees to the genera. We also introduce Mortierella formicae in Mortierellales , Mucoromycota and provide an updated phylogenetic tree.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.124
Threshold uncertainty score0.416

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0060.011
Science and technology studies0.0010.001
Scholarly communication0.0020.002
Open science0.0010.002
Research integrity0.0000.002
Insufficient payload (model declined to judge)0.1240.046

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.032
GPT teacher head0.219
Teacher spread0.187 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations305
Published2017
Admission routes1
Has abstractyes

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