Polymorphism of stable collagen fibrils
Bibliographic record
Abstract
Collagen fibrils are versatile self-assembled structures that provide mechanical integrity within mammalian tissues. The radius of collagen fibrils vary widely depending on experimental conditions in vitro or anatomical location in vivo. Here we explore the variety of thermodynamically stable fibril configurations that are available. We use a liquid crystal model of radial collagen fibril structure with a double-twist director field. Using a numerical relaxation method we show that two dimensionless parameters, the ratio of saddle-splay to twist elastic constants k24/K22 and the ratio of surface tension to chiral strength [small gamma, Greek, tilde] ≡ γ/(K22q), largely specify both the scaled fibril radius and the associated surface twist of equilibrium fibrils. We find that collagen fibrils are the stable phase with respect to the cholesteric phase only when the reduced surface tension is small, [small gamma, Greek, tilde] ⪅ 0.2. Within this stable regime, collagen fibrils can access a wide range of radii and associated surface twists. Remarkably, we find a maximal equilibrium surface twist of 0.33 rad (19°). Our results are compatible with corneal collagen fibrils, and we show how the large surface twist can explain the narrow distribution of corneal fibril radii. Conversely, we show how small surface twist is required for the thermodynamic stability of tendon fibrils in the face of considerable polydispersity of radius.
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How this classification was reachedexpand
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.040 | 0.006 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; both teacher heads agree on what is shown here.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".