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FISH e GISH revelam diferentes eventos de hibridização interespecífica entre Cuscuta denticulata e C. nevadensis (Convolvulaceae)

2018· article· pt· W2789217098 on OpenAlexaff
Amália Ibiapino, Miguel A. Garcı́a, Mihai Costea, Saša Stefanovi, Marcelo Guerra

Bibliographic record

VenueSemina Ciências Biológicas e da Saúde · 2018
Typearticle
Languagept
FieldAgricultural and Biological Sciences
TopicPlant Parasitism and Resistance
Canadian institutionsWilfrid Laurier UniversityUniversity of Toronto
Fundersnot available
KeywordsBiologyFish <Actinopterygii>Botany

Abstract

fetched live from OpenAlex

Eventos de hibridização interespecífica são importantes na evolução de diversas famílias de angiospermas. No gênero Cuscuta (Convolvulaceae), seção Denticulata, há apenas três espécies, duas diploides: C. denticulata Engelm. e C. nevadensis I.M. Johnst., ambas com 2n = 30) e uma tetraploide (C. veatchii Brandegee, 2n = 60). Recentemente, foi encontrada uma outra espécie tetraploide, denominada provisoriamente de C. psorothamnensis (2n = 60). Estudos moleculares sugerem que tanto C. veatchii quanto C. psorothamnensis teriam se originado de hibridização interespecífica entre C. denticulata e C. nevadensis. Para testar citologicamente essa hipótese foi realizada hibridização in situ fluorescente com sondas genômicas (GISH) dos dois supostos ancestrais diploides e com sondas de DNA ribossomal 5S e 35S (FISH) para identificar o número e posição desses sítios. A análise de GISH em C. veatchii revelou 30 cromossomos marcados mais fortemente com o DNA de C. denticulata, enquanto os 30 cromossomos restantes marcaram mais fortemente com a sonda genômica de C. nevadensis. Em C. psorothamnensis, pouco menos de 30 cromossomos marcaram com o DNA de C. denticulata ou com o DNA de C. nevadensis e alguns cromossomos pareceram não marcar com nenhuma das duas sondas. A FISH com DNAr revelou os seguintes números de sítios: C. denticulata, 2 (5S) + 2 (35S); C. nevadensis, 6 5S + 10 35S; C. veatchii, 6 (5S) + 4 (35S); C. psorothamnensis, 4 (5S) + 4 (35S). Variação no número de sítios de DNAr foi encontrada em todas as populações, exceto naquelas de C. denticulata. Os dados de GISH suportam a hipótese de que tanto C. veatchii quanto C. psorothamnensis são alopoliploides derivados de C. denticulata e C. nevadensis. Por outro lado, a análise de sítios de DNAr sugerem que dois ou mais eventos de hibridização interespecífica podem ter ocorrido entre C. denticulata e C. nevadensis.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.028
GPT teacher head0.264
Teacher spread0.236 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2018
Admission routes1
Has abstractyes

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