MétaCan
Menu
Back to cohort
Record W2790219241 · doi:10.1093/jcag/gwy009.275

A275 COMMENSAL BACTERIA IN THE SMALL INTESTINE INFLUENCE IMMUNE CELLS TO DICTATE HOST DRUG METABOLISM

2018· article· en· W2790219241 on OpenAlexaff
Kyle L. Flannigan, Kimberly Nieves, Sarah L. Erickson, Laurie Alston, Simon A. Hirota

Bibliographic record

VenueJournal of the Canadian Association of Gastroenterology · 2018
Typearticle
Languageen
FieldPharmacology, Toxicology and Pharmaceutics
TopicAdvancements in Transdermal Drug Delivery
Canadian institutionsUniversity of Calgary
Fundersnot available
KeywordsBiologySegmented filamentous bacteriaImmune systemGut floraInnate immune systemSmall intestineDrug metabolismDysbiosisMicrobiologyImmunityMetabolismImmunologyBiochemistry

Abstract

fetched live from OpenAlex

The ability of the intestinal microbiota to influence drug responses has been recognized, however the mechanisms through which this occurs remain unexplored. Work in germ free mice has demonstrated that colonization with different microbiota influences the expression of cytochrome P450 (CYP) enzymes in the liver. Like the liver, the small intestine (SI) expresses CYP enzymes including CYP3A11 which can metabolize over 60% of commercially available drugs. The activity of CYP enzymes in the SI has been shown to influence circulating levels of orally administered drugs, but how the microbiota affects this process is unknown. To investigate if distinct microbiota differentially modulate host drug-metabolism in the SI to influence drug activity and efficacy. SFB-free (SFB-) mice were obtained from Jackson (Jax) and SFB+ mice were obtained from Taconic (Tac). Feces from SFB+ Tac mice were mixed in PBS and orally gavaged to mice. 14 days later sections of ileum were used for PCR array or digested in collagenase to isolate lamina propria cells for flow cytometry. A monoclonal antibody for Thy1.2 was used to deplete innate lymphoid cells (ILCs) in RAG1-/- mice (lacking T- and B-cells). CYP3A11 activity was determined through the colourmetric breakdown of the substrate 7-benzyloxyresorufin. PCR array analysis of ileal sections revealed CYP3A11 as one of the most downregulated genes in both SFB+ Tac mice and Jax mice colonized with a SFB+ microbiota when compared to SFB- Jax mice. Further analysis showed that colonization of Jax mice with a SFB+ microbiota induced IL-22 production by type 3 innate lymphoid cells (ILC3). Increase IL-22 production positively correlated with fecal levels of SFB and reduced ileal CYP3A11 expression. Colonization of IL-22 KO mice with a SFB+ microbiota had no effect on the ileal expression of CYP3A11. Furthermore, depletion of ILCs in RAG1-/- mice colonized with a SFB+ microbiota prevented a decrease in the expression of CYP3A11. In mouse SI enteroid cultures, recombinant IL-22 dose-dependently reduced the expression of CYP3A11, an effect that was blocked by the STAT3 inhibitor Stattic. IL-22 treatment also significantly decreased the ability of SI enteroids to metabolize CYP3A11 specific substrates. Our data suggest that colonization with a specific microbiota can influence the expression and activity of the drug metabolising enzyme CYP3A11. This occurs through the production of IL-22 by SI ILC3, which down regulated CYP3A11 in a STAT3-specific manor and altered the ability of the small intestine to metabolise CYP3A11 specific substrates. These findings provide an understanding of how the intestinal microbiota modulates host drug metabolism, and how the microbiota can be manipulated to render various drug therapies, such as those for IBD, more effective. CAG, CCC, CIHRAlberta Innovates

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.226
Threshold uncertainty score0.785

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0030.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.028
GPT teacher head0.326
Teacher spread0.297 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2018
Admission routes1
Has abstractyes

Explore more

Same venueJournal of the Canadian Association of GastroenterologySame topicAdvancements in Transdermal Drug DeliveryFrench-language works237,207