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Rac1b, A Variant Of Rac1 Interacts With Calmodulin

2013· article· en· W2790913817 on OpenAlexaff
Neha Khanna, Bing Xu, Prashen Chelikani, Rajinder P. Bhullar

Bibliographic record

VenueThe FASEB Journal · 2013
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicProtein Kinase Regulation and GTPase Signaling
Canadian institutionsUniversity of Manitoba
Fundersnot available
KeywordsCalmodulinGTP'RAC1GTPaseEffectorGene isoformAmino acidFunction (biology)ChemistryCell biologyBiochemistryBiologySignal transductionGeneEnzyme

Abstract

fetched live from OpenAlex

Rac1b, a splice isoform of Rac1, is up‐regulated in malignant colorectal and breast cancer. It contains an additional 19 amino acid insertion close to the switch II domain, a region important for Rac1 interaction with regulators and effectors. This insertion leads to decreased GTPase activity and reduced affinity for GDP, resulting in intracellular predominance of GTP‐bound Rac1b. Previously, a 14 amino acid region essential for calmodulin (CaM) binding has been established in Rac1. A similar region exists in Rac1b. This led to our hypothesis that Rac1b interacts with CaM. Western Blot analysis showed that endogenous Rac1b interacts with CaM‐Sepharose, and that Rac1b binds to pure CaM, in a calcium dependent manner. Experiments using W7, a potent CaM antagonist, revealed that W7 does not play a role in GDP/GTP binding to Rac1b. However, the role of CaM in the activation and function of Rac1b still remains to be analyzed and is being pursued.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.221
Teacher spread0.213 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2013
Admission routes1
Has abstractyes

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